Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00413 ATGGAGATTCAGCAAAGCGTGAAGCTCACGGTCCACCACCGAAACATACACAAGAAATGGGCTTCACCAAAAGGTGCTAAAGAATCACCAGAGAAATTTTCAGAACCAATCAACACCACTCCGAGGCTGAAATGGAAGAAGCTCTTCTTCCACAAGTCATCCCAAAACATCATCGCTTCAAAACCCAACAAAACCCAAAACCCCCCTGAAGAGTTCCTCTGCCCCATTTCTGGTTCTCTAATGGCAGACCCTGTTATAGTCTCTTCAGGCCACTCCTTCGACCGAACCTCCGTCCAAGCCTGTAAAAATCTCAACTTTACCCCTCAACTCCCCGACGGCACAACCCCTGATTTCTCCACCGTAATCCCCAATCTTGCCCTCAAATCCGCCATTCTCAAATGGTCTCAAACCCAAGAACCCACCTCCATTACCACCCTCCCACCCAATCTCACCACTACAGAGAACCTCATTCGCACGCTAATGGCCTCAAAACCAACACCAAACCCAAAAGACCCACCTGTGAACCTGTTCAACCATGCAGAAACCGAAGTCCCTCTTCGACCAACGCACTTGTACTCAAGCTCTGAGGAATCCATAGCCACCGCCACGTCAGCATCAACCCCACCACTTCGACTCTCGACCCGACCCAGTTGCTGCTACTCTTCACCTTCCTCCTCTGAAATCGAACCATCAACCACACCCGAAGAAGAAGAAATCATGGCTAAACTGAGAAACCCTGAAGTATCAGTGATCGAAGAGGCGCTGGTTTCTCTCAGAAAGCTCACGAGAACGAGAGAGGAAACGAGGGTGCAGCTATGCACCCCTCGGATAATCTCTGCTCTGCGTTCCCTCGCTGTTTCTAAATACGACGCCGTTCAGGTGAACGCACTTGCCTCCGTGGTGAACCTTTCTCTGGAGAAGACGAATAAAGTGATGATCGTGCGGTCAGGGATCGTTCCACCGTTGATCGAAGTGTTGAAGTGCGGATCCTCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTTAGTTTGGCACTCGACGACGATAACAAAACCGCCATTGGGGTTCTCGGTGCTCTGTCGCCGTTGCTTCACGCGCTCCGGTCCGAGAGTGAGCGAACTCGCCATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTAAGAAGTAACCGGGCCAAGATGGTTAAGCTCGGGTCGGTTCAGGTTCTCTTGGGCATGGTTAAGTCGGGTCATAGGACGGGTCGGGTTCTTTTAATATTGGGCAATTTGGGTTCAGGGTCGGATGGGCGGGCTGTAATGTTGGATGCGGGTGCGGTGGAGTGTTTGGTTGAGTTGCTGAGTGGGAACGAGTTGGAGTCCGGGTCGACTCGGGAGAGTTGTGTTGCGGTTTTGTATGCACTGAGTCACGGCGGGTTGAGGTTCAAGGCGGTGGCGAAGGCGGCGGGGGTGGTGGAGGTGTTGCAAAAGGTGGAGAAGATGGGAAGTGAGAGGGCTAAAGAGAAGGTGAGAAGGATATTGGAGATGATGAGGGGCAAGGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGCTACTTGACTCGGGGTTGGGTTGTCGAACTCGGAGCCGACACGGTAGTGGGTTGGACGAGTCCACTGCTAACTCGGCCGAGTTTTGA 1659 0.528 MEIQQSVKLTVHHRNIHKKWASPKGAKESPEKFSEPINTTPRLKWKKLFFHKSSQNIIASKPNKTQNPPEEFLCPISGSLMADPVIVSSGHSFDRTSVQACKNLNFTPQLPDGTTPDFSTVIPNLALKSAILKWSQTQEPTSITTLPPNLTTTENLIRTLMASKPTPNPKDPPVNLFNHAETEVPLRPTHLYSSSEESIATATSASTPPLRLSTRPSCCYSSPSSSEIEPSTTPEEEEIMAKLRNPEVSVIEEALVSLRKLTRTREETRVQLCTPRIISALRSLAVSKYDAVQVNALASVVNLSLEKTNKVMIVRSGIVPPLIEVLKCGSSEAQEHASGALFSLALDDDNKTAIGVLGALSPLLHALRSESERTRHDSALALYHLSLVRSNRAKMVKLGSVQVLLGMVKSGHRTGRVLLILGNLGSGSDGRAVMLDAGAVECLVELLSGNELESGSTRESCVAVLYALSHGGLRFKAVAKAAGVVEVLQKVEKMGSERAKEKVRRILEMMRGKEVEEEDVDWEELLDSGLGCRTRSRHGSGLDESTANSAEF. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00413 552 MobiDBLite consensus disorder prediction 1 37 - -
Seca9g00413 552 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Seca9g00413 552 FunFam RING-type E3 ubiquitin transferase 234 510 - -
Seca9g00413 552 SUPERFAMILY ARM repeat 240 510 IPR016024 -
Seca9g00413 552 SUPERFAMILY RING/U-box 65 137 - -
Seca9g00413 552 MobiDBLite consensus disorder prediction 193 234 - -
Seca9g00413 552 Gene3D - 416 519 IPR011989 -
Seca9g00413 552 Pfam Armadillo/beta-catenin-like repeat 347 386 IPR000225 GO:0005515
Seca9g00413 552 Pfam Armadillo/beta-catenin-like repeat 309 345 IPR000225 GO:0005515
Seca9g00413 552 Pfam U-box domain 69 138 IPR003613 GO:0004842|GO:0016567
Seca9g00413 552 SMART arm_5 347 387 IPR000225 GO:0005515
Seca9g00413 552 SMART arm_5 427 470 IPR000225 GO:0005515
Seca9g00413 552 SMART arm_5 306 346 IPR000225 GO:0005515
Seca9g00413 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 354 IPR000225 GO:0005515
Seca9g00413 552 PANTHER U BOX DOMAIN-CONTAINING 54 511 - -
Seca9g00413 552 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Seca9g00413 552 MobiDBLite consensus disorder prediction 533 552 - -
Seca9g00413 552 Gene3D - 236 415 IPR011989 -
Seca9g00413 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 145 IPR013083 -
Seca9g00413 552 MobiDBLite consensus disorder prediction 193 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00413 Seca-Chr9 8921268 8922926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00413 62 552 U-box Gene Family AT5G40140 57.364 3.52e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00413 - - lja:Lj2g3v1020040.1 796.578