Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00399 ATGCATGGGTCCGGTGGTGAGGAGTGGAAACAGAGCCGGCACATGTGGCCTGTACCTTCCAACGCGACCACTGTAGCCCCCGATTCTTCACCGTCTGAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTCAAGCCTCCCCAGGATTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACGTTAGATAAAGAAGAAAATCCAAGTTTACAAGTGAATTGGCTTTACCGACCTGCTGACTTGAAGCTTGCTAAAGGGATTGTGCTGGAAACAGCACCAAACGAAGTCTTCTACTCCTTTCATCAGGATGTAACACCTGCTGCATCATTACTACATCCGTGTAAAGTAGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTGTATGACATTGAGAACAATTGTTTATGGTGGCTAACTGATAAGGACTATCTTAATGAACATCAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACATCAACACAGTCATTGAAATCTGGTTCTGATAACATTCAAAATAGTTCTTCCTTTGCGGTACAGGGTAAGGGAAAAAAGAGAGAGCGTGGTGATCAGGGATCTGAGTCATCTAAAAAAGAGCGGTTATTGAAAGTAGAAGATGGAGATTCTGGTCAATGTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATTACTGAAAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAGACTGGTACAGCTCATGCAACCTGATAGTGCTGATAAAAAAATAGATTTGGCTGGGCGAATAATGCTTGTTGATGTAATAGCGCTTACAGAACGGTATGAATGTCTTGGCCGGTTTGTACAGCTCAGGGGTTTGCCTGTGTTGGATGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGATGGTAATATGCCTAAAGAAAGTGACAAGTCTGTTGAAGAATTTTTGTTGGCTTTACTTCGTGCACTGGATAAGCTTCCTGTGAATCTTCATGCCCTACAAACCTGTAATGTTGGGAAGTCTGTTAATCATTTACGCACCCACAAAAATTCTGAAATTCAGAGGAAAGCCAGGAGTTTAGTAGACACATGGAAGAGACGTGTGGAAGCTGAAATGAATATGAATGATTCAAAGTCTGGTTCAACCCGTGCTGTTTCTTGGCCAGCAAAACCAGCAGCTTCTGAGGTTTCTCACCTTGGAAATAGGAAAACTGGAGGATCCTCAGAGAATGTTTCGAAGAGCTCTGCTATCCAATCCTCAGTATCTAAAAATTCCCAAACAAAGCTTAGTTCTGGTGAAGCACTGTCCAAGTCCTCTTCATCCCCTGGCTCAACTAAATCAATCACTACGTCACTGGACAGTAACTCGAAAGATCAAAACATTAAAGTCTTGGTTGGAGCTGCAACATCAGATCTACCTCTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAACAACAGCATATCATATTCTAGTGAACATGCAAAAACTATTGGTTCTTGTAGGGAAGATGCAAAGAACTCCACTGCAGTGTCAATGAGTGTGAGCAAAATTCCTGGTGGTGCATCTCGAACTCGAAAGTCTAGCAATGGTCTACATGGAGCTGGTGTTGCTGTAGTCCAAAAGGAGCATAGCTCTGCAAAAAATTCAACTAGAAATTCACCATCTGAAAAGGTTTCACCAACTCAAGTGTCCCGTGAAAAATCACCAGATCAGCCTGTTTTTGATCAAGGGAATAATCAGAGGCTGATTCTTAGGTTGCCAAACACTGGTCGTAGTCCTTCAAGGGGTGCTAGTGGGGTCTCTTTTGAAGAACCTGGAAGTACATGTGGCAAAGCATCACCTCCTGCTGACAAGAATGAGAATCAAGACAGAAGAGTGAAAGCTAAAACTGATTGTTTGCAGACCCATGTATCAAATATGATAAATGATGCATGTGATGCTAATGAAACTCTGACTAGTTGTGATGAAGGTAAAGGCTCTCCAATGGTTGATGAGCGGTGCAGGGCTAATGAAGATGGTGATAAGGTAGCAGAAATGTCAAAACCAACTAGTTCTTCATCTGGATTTATTCCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGCGTAAAGTTTTCTGAAGCAAGTGCCTCTGTGTCCCCTGGAGATGATGGGATGAATCTACTTGCTACTGTGGCTGCAGGGGAAATATCCAGATCTGAAAATGTCTCCCCTCGAGCTTCACCTGAGAGGAAGTCTCCTGCAGCTGATGAATCGAGCTCGGGGAATGAGTCCAAGTTAAAACATTCTGGTGAAGCAGCTCCTCACACTCTTGGGCAGTCTGATGGTGCGGTTACTGGAGAACATCCTTTGAATACAGTTACGACAACATTGCATGATATTTCAGGAGATTGTGAAGCCGTTTCATCCAGTTGTATAGAGAAAGCTGGTGATGGCAGAACCCAAATAAATTTATCTTCTACAGATTTGTTACAGAATGCTGAAGGTCAATGCTTACGGCCTGAAACCAAAGAGGATGCTTCTGAAACTATTTTGCCAGCGAAGCAGGAGACTCATGCAGAACCTGGAGGAGCAGACCATTTTCCGGAGCAGAGGGAGTTAGGAAGTCAATGGTCTAAAAGCAACAGTAATTCAGACTCCAAATTAAAGTCAAGGACTACCTCTTTTGATGATAATCAGAAGATTGATCGCATGGATGATGGAATCACAGAGAATGAAAAAACTTTGGCTTCAAAAGCTGTTGCAAGTGTTAATATTGAAAATGAACTAGGTGAAAAATCACCTGAGTTATCTTCAGGTGTTAATAATGACAGCCAGACTAGTGCAGAGAAAGTGACAGGTACGGGTATATCAGTGCAAAATGCCTCTTCATTTGCAGAAAACTCTGAATCCAGGGATTTTAAAAAGGAGGATGTCACACCACCTGCTTCTGGTAATGCTTTTACAGTATGCAGGGATGAAAATGCAGAAGACATGAAGCCAGTTGGCGTTGAGCCCAATGAAAAACGAATGGATCTGGATTCAGTAGTTTCAGATGGTGTTAATGAATGCACTGGAGATAATTTGGGTCGAAAAGAGGTTCACCCTGATTTACCAACAATTCCTGGGAAAGAGAATGAAGTGGCCAAAACATGTGAGTCAAACCTAGATGGAAATCAATCTGAGGTTGCAGGAGAGTGGCATGCATGCAATGTTAATCCATCCCTTACTGGTTCTGGGTCTGATGCAACAGTAAAACTGGACTTTGATTTGAATGAAGGCTTTCCTGTTGAAGATGCAAGCCAAGGGGAGATTGTTAGACAGGAAGAACCTATCACTTCATCTGCAGTTCATGTCCCTTGCCCATTGCCTTTTCCCATTTCATCCATCTCTGGTGGCTTCCATGCTTCAATTACAGTTGCATCTGCTGCCAAAGGGCCAGTTGTTCCACCAGAAAACCCATTGCGGAGTAAGGGGGAACTTGGATGGAAAGGGTCCGCCGCTACAAGTGCATTCAGGCCAGCTGAACCCAGGAAAAATCCTGAGACACCATCAAGTACTAGTGATATTCCTTCTGTTGATGCCGCTTCTGTCAAACAAGGCCGTCCTCCTTTAGATTTTGATTTAAATGTGGCAGATGAAAGAAGTTTTGAGGATGTAGCTGCTCGTGGTTCTTTAGAATCTGGACATGATCGGAGCCCTGTGGGACTTGATCTTGATTTGAACAGAGTTGATGAGACTCCTGAAGCCGGGTATTTCTCTATGAGCAAACTGGATATTCCTTCTTTACCAAGTAAGCCTTCATTGTCCAGTGGGTTATCTAATGGTGGAAGTGTCTCCAGAGACTTTGATTTAAATAATGGGCCAGGCCTTGATGAAGTTGGTACTGAAGTCCCATCGCGTAGTCAACAGATGAAAAGTACTGCAGCATTTTCCACTGCTGTTCATGGCACAAGAACAAATAATGCTGAAATTGGGAGTTATTCTTCATGGTTTCCTCAAGGCAATTCTTATTCTGCAATTACTGTCCCACCACTTCTGCCTGGTAGAGGGGAGCAGAGTTATGTTGCTGGTCCTGGGGCGCAGCGGATCATAGGTCCCGCAGGTAGCACGCCTTTTGCTCCTGAAATCTACAGGGGGCCAGTGCTTTCATCTTCTCCAGCTGTTGCTTACCCACCTACTACACCCTTTCCATATCCAGGCTTTCCTTTTGAGACCAATTTTCCATTATCTTCAAACTCCTTTTCTGGTTGTTCAACAGCATTTATGGATTCATCAACTGTAGGTGGGCTTTGCTTTCCTACCATGCCCTCACAGCCAGTTGGTCCTGGTGTAGTCTCATCCACATATCCCCGTCCCTATGTTATGAGTCTTCCAGGGGGTACAAGTAATGCGATTCCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGGTACAGATACAGAGCGGAGAGATGATAGATTGCCCTCGGGATTGAGGCAAATATCTGTCCCCAGTTCACAAGCCTTGATGGAGGATCACTTGAAGATGTTTCAGATGGCAGGTGCATTGAAAAGAAAAGAACCTGAGGGTGGTTGGGATGGAGCTGATAGATTCAGTAGTTACAAACATCCCTCATGGCAGTAG 4779 0.4388 MHGSGGEEWKQSRHMWPVPSNATTVAPDSSPSEFICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLTLDKEENPSLQVNWLYRPADLKLAKGIVLETAPNEVFYSFHQDVTPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEHQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNIQNSSSFAVQGKGKKRERGDQGSESSKKERLLKVEDGDSGQCRPESMLKSEIAKITEKGGLVDFEGVERLVQLMQPDSADKKIDLAGRIMLVDVIALTERYECLGRFVQLRGLPVLDEWLQEVHKGKIGDGNMPKESDKSVEEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARSLVDTWKRRVEAEMNMNDSKSGSTRAVSWPAKPAASEVSHLGNRKTGGSSENVSKSSAIQSSVSKNSQTKLSSGEALSKSSSSPGSTKSITTSLDSNSKDQNIKVLVGAATSDLPLTPIKEERSSSSSQSQNNSISYSSEHAKTIGSCREDAKNSTAVSMSVSKIPGGASRTRKSSNGLHGAGVAVVQKEHSSAKNSTRNSPSEKVSPTQVSREKSPDQPVFDQGNNQRLILRLPNTGRSPSRGASGVSFEEPGSTCGKASPPADKNENQDRRVKAKTDCLQTHVSNMINDACDANETLTSCDEGKGSPMVDERCRANEDGDKVAEMSKPTSSSSGFIPRSGQTYDASLSPMNALVESCVKFSEASASVSPGDDGMNLLATVAAGEISRSENVSPRASPERKSPAADESSSGNESKLKHSGEAAPHTLGQSDGAVTGEHPLNTVTTTLHDISGDCEAVSSSCIEKAGDGRTQINLSSTDLLQNAEGQCLRPETKEDASETILPAKQETHAEPGGADHFPEQRELGSQWSKSNSNSDSKLKSRTTSFDDNQKIDRMDDGITENEKTLASKAVASVNIENELGEKSPELSSGVNNDSQTSAEKVTGTGISVQNASSFAENSESRDFKKEDVTPPASGNAFTVCRDENAEDMKPVGVEPNEKRMDLDSVVSDGVNECTGDNLGRKEVHPDLPTIPGKENEVAKTCESNLDGNQSEVAGEWHACNVNPSLTGSGSDATVKLDFDLNEGFPVEDASQGEIVRQEEPITSSAVHVPCPLPFPISSISGGFHASITVASAAKGPVVPPENPLRSKGELGWKGSAATSAFRPAEPRKNPETPSSTSDIPSVDAASVKQGRPPLDFDLNVADERSFEDVAARGSLESGHDRSPVGLDLDLNRVDETPEAGYFSMSKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGPGLDEVGTEVPSRSQQMKSTAAFSTAVHGTRTNNAEIGSYSSWFPQGNSYSAITVPPLLPGRGEQSYVAGPGAQRIIGPAGSTPFAPEIYRGPVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNSFSGCSTAFMDSSTVGGLCFPTMPSQPVGPGVVSSTYPRPYVMSLPGGTSNAIPDSRKWGSQSLDLNSGPGGTDTERRDDRLPSGLRQISVPSSQALMEDHLKMFQMAGALKRKEPEGGWDGADRFSSYKHPSWQ. 1593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00399 1592 MobiDBLite consensus disorder prediction 218 249 - -
Seca9g00399 1592 Gene3D - 24 254 IPR043151 -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 918 934 - -
Seca9g00399 1592 Pfam BAH domain 41 147 IPR001025 GO:0003682
Seca9g00399 1592 ProSiteProfiles TFIIS N-terminal domain profile. 321 407 IPR017923 -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 935 955 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 512 571 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1506 1527 - -
Seca9g00399 1592 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1592 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 584 638 - -
Seca9g00399 1592 CDD TFIIS_I 329 405 - -
Seca9g00399 1592 SMART BAH_4 40 155 IPR001025 GO:0003682
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1068 1088 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 16 30 - -
Seca9g00399 1592 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 272 408 IPR035441 -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 189 217 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 178 251 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1224 1238 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 407 490 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 436 490 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1566 1592 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1189 1248 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 901 955 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 510 669 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 979 1012 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1070 1084 - -
Seca9g00399 1592 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 309 417 IPR035441 -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 714 734 - -
Seca9g00399 1592 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Seca9g00399 1592 Pfam TFIIS helical bundle-like domain 355 404 IPR017923 -
Seca9g00399 1592 SMART TFS2_5 327 406 IPR003617 GO:0005634
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1 30 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 971 1039 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 782 834 - -
Seca9g00399 1592 MobiDBLite consensus disorder prediction 1504 1540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00399 Seca-Chr9 8572024 8580458 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca9g00399 BAH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00399 - - gmx:112998769 2410.56