Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00397 ATGTCGCAAGGGTACGCGATCGAGCTGTACATGGACCCTGCGCTGGAAAACCAGGTTCTGAAAGCGTGGAACGTTCTTGCCCGAAGACAAATCAGCACTCAGCTAATCGAAATGGAATCACGCCCTCACATCACTCTCTTCTCCACCCAATTTCTAGAACCTTCTAAGCTCGAGTCACTTCTCAAAACCCTCGCCTCAAAACACGACCCTTTCCCCCTCTCATTCTCTTCCATCGGTGCATTCCCAAATGATAACAACGTTCTCTTCCTGTCTCCTACACCTTCCCTCTCACTGCTTCAGTTTCAGTCTCAGCTCTGTGATGCTATCAGAAAAGAAGGCATTGACGTTGGCGATGACTACTCCCTTGGTTCTTGGATACCCCATTGCTCTGTTGCACATCAAGTCCCTAAAGCTAGGATGGCTGAGGCTTTCTCTCTCTTGAGGGACTTGAAATTGCCGGTTACTGGTTATGCTGTTGACGTTGCCCTCGTTCAGTTCTCTCCGGTTCGCGAGCTTTTCTCCTTTGTTCTTGGAAACACTGTAGATCAGTGA 552 0.4891 MSQGYAIELYMDPALENQVLKAWNVLARRQISTQLIEMESRPHITLFSTQFLEPSKLESLLKTLASKHDPFPLSFSSIGAFPNDNNVLFLSPTPSLSLLQFQSQLCDAIRKEGIDVGDDYSLGSWIPHCSVAHQVPKARMAEAFSLLRDLKLPVTGYAVDVALVQFSPVRELFSFVLGNTVDQ. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00397 183 Pfam 2'-5' RNA ligase superfamily 41 165 - -
Seca9g00397 183 SUPERFAMILY LigT-like 4 154 IPR009097 -
Seca9g00397 183 Gene3D Cyclic phosphodiesterase 5 178 - -
Seca9g00397 183 PANTHER - 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00397 Seca-Chr9 8552905 8556126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00397 1 182 Calmodulin-binding Proteins AT5G40190 68.681 7.83e-89 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00397 - - csv:101208638 288.115