Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00396 ATGTCGCAAGGGTTCGCGATCGAGCTATACATGGACCCTGCGCTGGAAAACCAGGTTCTGAAAGCGTGGAACGTTCTTGCCCGAAGACAAATCAGCACTCAGCTAATCGAAATGGAGTCACGCCCTCACATCACTCTCTTCTCCACCCAATTTCTAGAACCTTCTAAGCTCGAGTCACTTCTTAAAACCCTCGCCTCAAAACACGACCCTTTCCCTCTCTCATTCTCTTCCATCGGTGCGTTCCCCAACGACAACAACGTATTGTTCCTCTCTCCCACACCTTCACTCTCACTGCTTCAGTTTCAGTCACAGCTATGTGATGCTATCAGAAAAGAAGGCATTGACGTTGGCGATGACTACTCCCTCGGTTCTTGGATACCTCATTGTTCCGTTGCACACCAAGTCCCTAAAGCTAGGATGGCTGAGGCTTTCTCTCTCTTGAGGGACTTGAAATTGCCGGTTACCGGTTACGCCGTCGACGTTGCCCTCGTTCAGTTCTCTCCGGTTCGCGAGCTCTTCTCCTTTGTACTTGGCAATGGCAACACCCTAGATCCCTAA 558 0.5036 MSQGFAIELYMDPALENQVLKAWNVLARRQISTQLIEMESRPHITLFSTQFLEPSKLESLLKTLASKHDPFPLSFSSIGAFPNDNNVLFLSPTPSLSLLQFQSQLCDAIRKEGIDVGDDYSLGSWIPHCSVAHQVPKARMAEAFSLLRDLKLPVTGYAVDVALVQFSPVRELFSFVLGNGNTLDP. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00396 185 Pfam 2'-5' RNA ligase superfamily 41 165 - -
Seca9g00396 185 Gene3D Cyclic phosphodiesterase 5 179 - -
Seca9g00396 185 PANTHER - 1 180 - -
Seca9g00396 185 SUPERFAMILY LigT-like 5 154 IPR009097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00396 Seca-Chr9 8548194 8548751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00396 1 179 Calmodulin-binding Proteins AT5G40190 68.715 8.33e-87 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00396 - - csv:101208638 285.034