Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00377 ATGTATTCTAAGTGGTTTCTTGACCATACCCATTTGAAGATGGCTTGGATTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAACTACCCACCACCATACCCTGGTGCTGCTTTTCACAAAGACCCACCAATGTCTTCTTCTTCATCTTCAACAACAACACCTTCATCTTCTGGTACTAAAATCAGTCCAGCTGTTCTTTTCATTATAGTGGTTCTGGCTGTTCTGTTTTTCATTTCTGGTATCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTCCTCAATCTAATAGACACCAGGAAATTTCCACCTCTGATGCTCTCCAAAGGCAGCTTCAGCAGCTTTTCCATCTCCATGATTCTGGTCTGGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAGTTCAAGGGGATTGTGGGTATGAAAGAGCCTTTTGACTGTGCTGTTTGTCTCTGTGAGTTCTCTGAGAAAGATAAGCTCAGATTGTTACCTATGTGCAGCCATGCTTTTCATATCAGTTGTATAGACACTTGGCTTCTGTCAAATTCCACATGCCCACTTTGTAGAGGAACCCTCCTTACTCCAGGATTTTCTGTTGAAAACCCTATATTTGATTATGATGATCTGAGGGAAGATGATGTGTTCCCTTGTAATGTGGAAAATGCATTCACTACTAGACAAAAAACAGCTGTAGTTGAAGAAACTGTAGAGAAAGGTGTTTTCCCTGTAAGGCTTGGTAAATTCAGGAAGATGAATGTGGAGGCTGGGGAGAATGGTGTAGGAGAAACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGATCTTACCAGTATGTGGTTGGTAATTCAGACCTCCGGGTAGCTTTGAACCATGACAATAAAGGGCATGATACAAGGCTTTCTAAAGGAACAGAACATGATGTGAAGCTTTCAGTGGAAGGGGATATGGAAGCAAAGAAGATTAGTAATGTCAGTAAAGGTGACAGCTTTTCTATTTCCAAAATCTGGTTGTGGCCGAAGAAGGGAAAATCTTTGGAATCTCATACAGGCATGCCATCTTATCTTAATACTGACTTGCATGGGATGAGGGAAACAGAAGGGGTATGA 1137 0.4134 MYSKWFLDHTHLKMAWIKHQIQQKDGYLNYPPPYPGAAFHKDPPMSSSSSSTTTPSSSGTKISPAVLFIIVVLAVLFFISGILHLLVRFLIKHPSSSASPQSNRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKGIVGMKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSVENPIFDYDDLREDDVFPCNVENAFTTRQKTAVVEETVEKGVFPVRLGKFRKMNVEAGENGVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHDNKGHDTRLSKGTEHDVKLSVEGDMEAKKISNVSKGDSFSISKIWLWPKKGKSLESHTGMPSYLNTDLHGMRETEGV. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00377 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 201 IPR013083 -
Seca9g00377 378 MobiDBLite consensus disorder prediction 43 59 - -
Seca9g00377 378 Pfam Ring finger domain 153 196 IPR001841 -
Seca9g00377 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 57 346 - -
Seca9g00377 378 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Seca9g00377 378 SMART ring_2 154 195 IPR001841 -
Seca9g00377 378 FunFam RING-H2 finger protein ATL46 116 201 - -
Seca9g00377 378 CDD RING-H2_EL5-like 153 196 - -
Seca9g00377 378 MobiDBLite consensus disorder prediction 39 59 - -
Seca9g00377 378 SUPERFAMILY RING/U-box 140 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00377 Seca-Chr9 8308811 8309947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00377 51 353 C3H Transcription Factor Family AT2G18650 41.964 1.61e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00377 - - gmx:100806337 553.132