Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00360 ATGTTTAGAAAAATTTTAGTCTTTCAGCACATGTTGACAATGGCAGTTATTATATCTTTGGTACTAATATTTGTGGGAATTGTGTTCCTGGTGCTACTTCATGTTTGTTTTTCCGAGTGGTTCTCTAGAAGAGGAGGCAGAGGATCAATGGCTGAGAGGGGTACTTATGGGGGCAGAAGCATGTCTATCAATGACTTGGAGAAGCTTCCCTGCTATAATTATGTTGCCAAAGACAATACAAACAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTCACTACAGGAGATAAGTGCAGATTGTTGCCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTAGACAAATGGCTTCTAAAGACACCCATATGTCCAATTTGCCGATCCAGTGCTGGTTCTCATAGTGGAAACCAAGTTGTAGGTAACAATGACTACTTTATTGAATCTAGGGAGAGCCAAACTGTCACAGGAAGCCAGCCAGATGACAATAGCTTACAGTTAAGAGAGAGCATAGCAAGTGGTCCATCCAGAAATGGTGTAGAAATGAGAGAAAATTCAACATTAGGAAGCCCCAACTCTGGTCACAGAGAAGTAGAATCAGGAGAGCACCAGATAGGTGCAATGCAATTGGAGATCAGATAA 642 0.4221 MFRKILVFQHMLTMAVIISLVLIFVGIVFLVLLHVCFSEWFSRRGGRGSMAERGTYGGRSMSINDLEKLPCYNYVAKDNTNSPVDCAVCLENLTTGDKCRLLPMCKHSFHAQCVDKWLLKTPICPICRSSAGSHSGNQVVGNNDYFIESRESQTVTGSQPDDNSLQLRESIASGPSRNGVEMRENSTLGSPNSGHREVESGEHQIGAMQLEIR. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00360 213 Pfam Ring finger domain 85 128 IPR001841 -
Seca9g00360 213 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Seca9g00360 213 SUPERFAMILY RING/U-box 73 138 - -
Seca9g00360 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Seca9g00360 213 CDD RING-H2_EL5-like 85 128 - -
Seca9g00360 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 170 - -
Seca9g00360 213 MobiDBLite consensus disorder prediction 173 194 - -
Seca9g00360 213 SMART ring_2 86 127 IPR001841 -
Seca9g00360 213 MobiDBLite consensus disorder prediction 173 205 - -
Seca9g00360 213 FunFam RING-H2 finger protein ATL2K 61 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00360 Seca-Chr9 8112505 8113146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00360 54 130 C3H Transcription Factor Family AT1G74410 41.558 1.70e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00360 - K15692 lang:109353575 237.269