Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00357 ATGATCATGGAACTCACCGATTCCACCGGCGGCGACCGCAACAACAACCCGCCGCCGTTGCAGCAGCAGCAGCAAGACTCTCGCTCCGGCCTCGGAATCGACCTCAACGAGATCCCTTCCCCTTCTTCTTCCTTCACTGAAACCCTACCGGACTTTGCCATTGACATCGTCCGTGCTTACCATGAGAACCCCGCTCCTCCTCCTGGCGGTCCTGCCGCCCTCCCCCGCGGTTTCACTCCCTGTTCCATCTGCACCAAGCCTGTTGGCACTGGAGTAAGCCAACAAGTCATTGTCTGTGACGGCTGTGAGCGCAGCTTCCACTTGGCTTGTGCCGGTATTCGCGGCGGCCGCCAGTCGTCGGGCCTTGATGAATGGGTCTGCGGCGAGTGTGTTTCCGGTGGGGTGAAAAGTAAAAGATGGCCACTAGGCGTCAAGTCCAAGCAGCTTCTTGATATTAACGCTTCGCCACCCAGTGATGCTGATGGGGATGGTGGTGGAGAGGAATCACAGGATTCAAGGTGTAGAACCAGAGTTCTATGTTCAATTCCTAATCCCATAGAGCCCAAAGTGGTTTGCATATCCATCACCGATCCAGATGCCACTGATTCCTCTGTTGTCGTGGAAGGAGAGTGCTTCCCTCCAAGAGAGTGA 651 0.5591 MIMELTDSTGGDRNNNPPPLQQQQQDSRSGLGIDLNEIPSPSSSFTETLPDFAIDIVRAYHENPAPPPGGPAALPRGFTPCSICTKPVGTGVSQQVIVCDGCERSFHLACAGIRGGRQSSGLDEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGGGEESQDSRCRTRVLCSIPNPIEPKVVCISITDPDATDSSVVVEGECFPPRE. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00357 216 MobiDBLite consensus disorder prediction 8 46 - -
Seca9g00357 216 SUPERFAMILY FYVE/PHD zinc finger 76 142 IPR011011 -
Seca9g00357 216 ProSitePatterns Zinc finger PHD-type signature. 81 130 IPR019786 -
Seca9g00357 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 139 IPR013083 -
Seca9g00357 216 SMART PHD_3 80 131 IPR001965 -
Seca9g00357 216 ProSiteProfiles Zinc finger PHD-type profile. 78 133 IPR019787 -
Seca9g00357 216 PANTHER OS02G0192300 PROTEIN 21 172 - -
Seca9g00357 216 CDD PHD_SF 81 130 - -
Seca9g00357 216 MobiDBLite consensus disorder prediction 1 46 - -
Seca9g00357 216 MobiDBLite consensus disorder prediction 151 172 - -
Seca9g00357 216 Pfam PHD-finger 81 131 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00357 3 173 C2H2 Transcription Factor Family AT3G01460 42.077 1.01e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca9g00357 PHD 4.4e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00357 K22768 - gmx:100791814 217.238