Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00355 ATGGAGTCTGGACGTCTTTATTTTGATACCTCTGCTTGTCGTGGGAACAACATGAACATGCTCTTCCTCGGGAATGCTGCTGATCTTGGTTTTCGAGGAAGGTCGATGATGAGCATGGAGGAAGGCTCAAAGAGGCGACCTTTCTTCAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAGGAGCAGTTGCCGGAGAAGAAACGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGGCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGCAGGGCTAGATGGAAGACCAAGCAACTTGAGAGGGATTATGATGTTCTCAAGGCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTAGTGGCATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGATGCCAGGGGAGCCATTATCAGACAAGAAAGATGATCCACTTCCAGTAGATATAGCTCAAATTTTCAGCATGAAGGTGGAGGACCACATGAGTTCTGGAAGTGTTGGAAGTGCAGTGGTGGACGAGGGTAGTCCCCAGCTTGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGATAATTATGTGGCCCCAGTTCAGACTCAGTCAGAGGAGGAAGATGGGAGTGATGATGGGAGGAGTTACTTAGATGTGTTTGTGGCATCTGAAACTGAGCAGCAAAACCATGAGGAGGGAGAGGCATTGAATTGGTGGGGTAATATGTATTATGTTGCATAA 849 0.4723 MESGRLYFDTSACRGNNMNMLFLGNAADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQLPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSTYDSIMKENEKLKSEVVASLNEKLQVQAKEMPGEPLSDKKDDPLPVDIAQIFSMKVEDHMSSGSVGSAVVDEGSPQLVVDSVDSYFPADNYVAPVQTQSEEEDGSDDGRSYLDVFVASETEQQNHEEGEALNWWGNMYYVA. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00355 282 SMART HOX_1 66 127 IPR001356 GO:0003677
Seca9g00355 282 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
Seca9g00355 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 227 IPR045224 GO:0003700
Seca9g00355 282 CDD homeodomain 68 124 IPR001356 GO:0003677
Seca9g00355 282 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Seca9g00355 282 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Seca9g00355 282 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Seca9g00355 282 Gene3D - 61 129 - -
Seca9g00355 282 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Seca9g00355 282 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Seca9g00355 282 Coils Coil 136 156 - -
Seca9g00355 282 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Seca9g00355 282 Pfam Homeobox associated leucine zipper 123 166 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00355 Seca-Chr9 7911128 7914291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00355 1 276 Homeobox Transcription Factor Family AT3G01470 60.498 6.51e-104 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca9g00355 Homeodomain 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00355 K09338 - gmx:100797836 441.425