Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00348 ATGAGGAAGAGTGAGAGTGGGGGTGGTGGTGGGTATGTGAGAGCGGATCAGATAGATCTGAAGAGCTTGGATGAGCAGCTTCAGAGACATCTGAGCAGAGCATGGACCATGGAGAAGAACAAGGAGAAGGAAGAAGATGAGCATGAAGGAAGGTCTACACGAAGTAGGCAAGAATGGGAGATTGACCCCTCCAAGCTCATCATCAAGACCGTCATTGCTCGTGGCACTTTTGGCACTGTTCACCGTGGGATTTATGATGGCCAAGATGTTGCAGTTAAGCTCCTTGATTGGGGGGAAGAGGGCCATCGGTCAGATGCTGAAATAGCTTCATTGAGAGCAGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAACCAAGGTAATATGTAGGTCTTCATTCTGTGCAAACATTTATGTGAGAATTTTCTTATTCACTCCTGCTGTCCAATCCATTTTGCAGTTTATTGGGGCGACAATGGGAACATCAGACCTACAGATACAAACGGAAAGTGGTCATATAGGCATGCCCAGTAATGTTTGTTGTGTTGTTGTTGAATATTGTCCTGGGGGTGCACTGAAGTCTTACCTCATAAAAAACCGGAGAAGGAAGCTGGCTTTTAAAGTGGTTGTTCAACTGGCTCTTGACCTTGCAAGAGGGTTGAGCTATCTCCACACAAAGAAGATTGTCCACAGAGATGTTAAAACAGAAAATATGCTTCTGGACAAGACACGGACCTTGAAAATAGCTGATTTTGGAGTAGCTCGTATTGAGGCTTCCAATCCTCATGACATGACTGGTGAAACTGGAACCCTTGGTTATATGGCTCCTGAGGTTCTAAATGGTAATCCATACAATAGAAAATGTGATGTGTACAGTTTTGGCATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCAGAAGTGACATCAGCTGTCGTACGACAGAATCTTAGGCCAGAGATTCCGCGTTGTTGTCCAAGCTCTCTAGCAAATGTGATGAAAAGATGCTGGGATGCCAATCCTGATAAGAGGCCAGAGATGGATGAAGTGGTGTTCATGTTGGAAGCTATTGACACTTCAAAGGGTGGAGGTATGATCCCTCATGATCAGCCTCAGGGTTGTTTATGCTTCCGCAGGTATCGAGGACCTTGA 1191 0.4509 MRKSESGGGGGYVRADQIDLKSLDEQLQRHLSRAWTMEKNKEKEEDEHEGRSTRSRQEWEIDPSKLIIKTVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLDHPNVTKVICRSSFCANIYVRIFLFTPAVQSILQFIGATMGTSDLQIQTESGHIGMPSNVCCVVVEYCPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHTKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVFMLEAIDTSKGGGMIPHDQPQGCLCFRRYRGP. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00348 396 PRINTS Tyrosine kinase catalytic domain signature 228 246 IPR001245 GO:0004672|GO:0006468
Seca9g00348 396 PRINTS Tyrosine kinase catalytic domain signature 190 203 IPR001245 GO:0004672|GO:0006468
Seca9g00348 396 PRINTS Tyrosine kinase catalytic domain signature 294 316 IPR001245 GO:0004672|GO:0006468
Seca9g00348 396 PRINTS Tyrosine kinase catalytic domain signature 338 360 IPR001245 GO:0004672|GO:0006468
Seca9g00348 396 MobiDBLite consensus disorder prediction 31 57 - -
Seca9g00348 396 PIRSF ILK 179 376 - -
Seca9g00348 396 PIRSF ILK 16 145 - -
Seca9g00348 396 Pfam Protein tyrosine and serine/threonine kinase 183 365 IPR001245 GO:0004672|GO:0006468
Seca9g00348 396 Gene3D Transferase(Phosphotransferase) domain 1 193 379 - -
Seca9g00348 396 ProSiteProfiles Protein kinase domain profile. 66 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00348 396 FunFam Serine/threonine-protein kinase HT1 193 378 - -
Seca9g00348 396 Gene3D Phosphorylase Kinase; domain 1 45 145 - -
Seca9g00348 396 FunFam Kinase suppressor of Ras 1 55 145 - -
Seca9g00348 396 SUPERFAMILY Protein kinase-like (PK-like) 50 367 IPR011009 -
Seca9g00348 396 CDD STKc_MAP3K-like 72 367 - -
Seca9g00348 396 SMART serkin_6 66 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00348 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Seca9g00348 396 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00348 Seca-Chr9 7676644 7681674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00348 3 334 MAP Kinase Kinase Kinase AT3G01490 71.314 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca9g00348 PK_Tyr_Ser-Thr 6.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00348 - - gmx:100796762 712.99