Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g00339 | ATGGCATCTCACATAAAAGCTTGGGTATACTCTGAATATGGAAATATAGAAGAGATTCTGAAATTTGATCCTAATGTACCTATACCTGACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCAGCACTTAACCCTGTTGATTATAAAAGGGCTCTGGGGTATTTCAAGAACACTGACTCTGCTTTACCAACTGCTCCAGGGTATGATGTTGCTGGTGTGGTGGTCAGAGTGGGAAATCAAGTGACAAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGAGAATGCTTTGAACCATCCAAAGACCATTGGGTCTTTGGCAGAGTATACTGCTGCTGAAGAAAAAGTACTTGCTCACAAACCCTCCAATTTGAGTTTTATTGAAGCTGCTAGCCTTCCTTTAGCCATCATTACTGCATATCAGGGACTTGAAAGAGTTGAGTTTTCTGCTGGAAAATCTATACTTGTTCTGGGAGGTGCTGGAGGAGTTGGAACACTTGTTATTCAGCTCGCTAAGCATGTATTTGGGGCATCTAAGGTTGCAGCTACTGCTAGTACTCCCAAACTGGAATTGTTGAGAAACTTGGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTGCCAGAAAAGTTTGATGTGGTGTATGATGCAGTAGGGCAGAGTGACAGGGCATTGAAGGCTATTAAAGAAGGGGGCAAGGTTGTGACAATATTGCCACCTGAAACTCCACCAGCTGTATTCTTCTTACTCACTTCAGATGGGGCTGTGCTGGAGAAATTACAACCTTACTTGGAGAGTGGTAAGACTGTTCCGGGGTTTGATGTAGCTGGTGTAGTGGTCAGAGTGGGAAGTCAAGTGAGGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGAACATGATGTGAACTATCCAAAGACCATTGGTTCTTTGGCAGAGTATACTGCGGCTGAAGAGAAAGTATTGGCTCACAAACCCTCCAATTTGAGCTTTATTGAAGCTGCTGGCCTTCCTTTAGCAATCATCACTGCTTATCAAGGACTTGAAAGAGTTGAGTTTTCTGCTGGCCAATCCATACTTGTTCTTGGAGGTGCTGGTGGAGTTGGAACCCTTCTTATTCAGCTCGCCAAGCATGTATTTGGTGCATCTAAGGTTGCAGCTACTGCTAGTACTGCCAAACTGGAATTGTTGAGAAACTTGGGAGCAGACTTGCCTATTGATTATACAAAGGAGAATTTTGAAGAACTGCCAGAGAAGTTTGATGTGGTGTATGATGCAGTAGGGCAGAGTGACAGGGCATTGAAGGCTGTTAAAGATGGGGGCAAAGTTTTGACAATAACTGATCCACCTGGAGATCCACCAGCCATCCCATTCTCACTCACTTCAGATGGAGCTGTGTTGGAGAAACTACAACCTTACTTGGAGAGTGGTAAGGTGAAGCCAATACTTGATCCCAAGAGCCCCTTTCCATTTTCTCAGACTGTAGAAGCTTTTTCCTACCTCAAGACTAATAGAGCCACTGGGAAAGTAGTTATATATCCCATCCCTTAA | 1581 | 0.4326 | MASHIKAWVYSEYGNIEEILKFDPNVPIPDIKEDQVLIKVVAAALNPVDYKRALGYFKNTDSALPTAPGYDVAGVVVRVGNQVTKFKVGDEVYGDINENALNHPKTIGSLAEYTAAEEKVLAHKPSNLSFIEAASLPLAIITAYQGLERVEFSAGKSILVLGGAGGVGTLVIQLAKHVFGASKVAATASTPKLELLRNLGADLPIDYTKENFEELPEKFDVVYDAVGQSDRALKAIKEGGKVVTILPPETPPAVFFLLTSDGAVLEKLQPYLESGKTVPGFDVAGVVVRVGSQVRKFKVGDEVYGDINEHDVNYPKTIGSLAEYTAAEEKVLAHKPSNLSFIEAAGLPLAIITAYQGLERVEFSAGQSILVLGGAGGVGTLLIQLAKHVFGASKVAATASTAKLELLRNLGADLPIDYTKENFEELPEKFDVVYDAVGQSDRALKAVKDGGKVLTITDPPGDPPAIPFSLTSDGAVLEKLQPYLESGKVKPILDPKSPFPFSQTVEAFSYLKTNRATGKVVIYPIP. | 527 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g00339 | 526 | ProSitePatterns | Quinone oxidoreductase / zeta-crystallin signature. | 155 | 176 | IPR002364 | GO:0008270|GO:0016491 | |
| Seca9g00339 | 526 | Gene3D | - | 12 | 277 | - | - | |
| Seca9g00339 | 526 | SUPERFAMILY | GroES-like | 274 | 371 | IPR011032 | - | |
| Seca9g00339 | 526 | Gene3D | - | 278 | 522 | - | - | |
| Seca9g00339 | 526 | Pfam | Zinc-binding dehydrogenase | 166 | 245 | IPR013149 | - | |
| Seca9g00339 | 526 | ProSitePatterns | Quinone oxidoreductase / zeta-crystallin signature. | 366 | 387 | IPR002364 | GO:0008270|GO:0016491 | |
| Seca9g00339 | 526 | PANTHER | NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC | 2 | 276 | IPR044626 | GO:0016628 | |
| Seca9g00339 | 526 | CDD | MDR_like_2 | 278 | 522 | - | - | |
| Seca9g00339 | 526 | SMART | PKS_ER_names_mod | 14 | 522 | IPR020843 | GO:0016491 | |
| Seca9g00339 | 526 | CDD | MDR_like_2 | 6 | 279 | - | - | |
| Seca9g00339 | 526 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 339 | 467 | IPR036291 | - | |
| Seca9g00339 | 526 | Pfam | Alcohol dehydrogenase GroES-like domain | 34 | 97 | IPR013154 | - | |
| Seca9g00339 | 526 | Gene3D | - | 358 | 473 | - | - | |
| Seca9g00339 | 526 | Gene3D | - | 147 | 261 | - | - | |
| Seca9g00339 | 526 | Pfam | Zinc-binding dehydrogenase | 410 | 522 | - | - | |
| Seca9g00339 | 526 | SUPERFAMILY | GroES-like | 5 | 162 | IPR011032 | - | |
| Seca9g00339 | 526 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 128 | 254 | IPR036291 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g00339 | Seca-Chr9 | 7553016 | 7561137 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g00339 | 33 | 251 | Monolignol Biosynthesis Gene Families | AT4G37970 | 25.000 | 5.90e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g00339 | K18980 | - | gmx:100791274 | 462.611 |