Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00338 ATGGTTGGTGGTGGTAGTGATGGCTCACTTGATCTCTGTGCAAGAGTCTGCATAATTGATGATCATGAAAACATCATTTTCCATTCCTATGTAAACCCACCAATTCCAGTCACAAACTATAGGTTTGGGATGACAGGTATCCGACCAGAATACTTGAGGGATGCAATGCCAATGAGGCAGGTGCAAAGGAGGATTCAAGACTTCCTATGCAATGGAGAATCTTTGTGGAAAATTCAACCAAGAGGAGGAAATGCCAAAATTCTTGTGGGTCATGGTTTAGATCATGACCTAGAATCCTTGCAAATAGAATATAAAGCTGAAAAAATCAGGGACACAGCAAAATACCCTCCACTGATGAAATCGAGCAAGTTGAGCAACTCACTCAAGTACTTAACACAAGCATATCTTGGGTATGACATTCAAATGGGGATACAGGATCCATATGATGATTGTGTAGCAACAATGAGGCTGTACAAGAGAATGAGATGTCAAGGACACAAAATAGAGGAATACCCTTTGGCATCTGACCCACAAAACAGGAATAATTTTGGTTCATGGAGGCAAAGTGAACTTGAGAAAATGACCCCCCAACAAATGCTGGAAATCTCAAGGTCAGACTACAATTGCTGGTGCTTGGATTCCTTATATATATAA 654 0.4067 MVGGGSDGSLDLCARVCIIDDHENIIFHSYVNPPIPVTNYRFGMTGIRPEYLRDAMPMRQVQRRIQDFLCNGESLWKIQPRGGNAKILVGHGLDHDLESLQIEYKAEKIRDTAKYPPLMKSSKLSNSLKYLTQAYLGYDIQMGIQDPYDDCVATMRLYKRMRCQGHKIEEYPLASDPQNRNNFGSWRQSELEKMTPQQMLEISRSDYNCWCLDSLYI. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00338 217 FunFam RNA exonuclease 4 1 177 - -
Seca9g00338 217 Gene3D - 1 174 IPR036397 GO:0003676
Seca9g00338 217 SMART exoiiiendus 1 167 IPR013520 -
Seca9g00338 217 SUPERFAMILY Ribonuclease H-like 8 159 IPR012337 -
Seca9g00338 217 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 212 IPR047021 GO:0004527
Seca9g00338 217 CDD REX4_like 1 159 IPR037431 GO:0006364|GO:0008408
Seca9g00338 217 Pfam Exonuclease 14 158 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00338 Seca-Chr9 7549615 7552256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00338 1 215 C2H2 Transcription Factor Family AT3G27970 75.349 5.09e-125 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00338 - - aprc:113862359 383.259