Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00316 ATGGAGCATGTTTTAGAAAAAAGATTTCCTCTCAGTGCAAAAGATTACAAGTTGTATGAAGAAGTTGGTGAAGGAGTAAGTGCCTCAGTATACAGGGCTCTCTGCATTCCACTCAATGAGATAGTTGCCATCAAGGTTCTTGATCTCGAGAAGTGCAATAATGATTTGGATGGCATTCGGAGAGAGGTACAGACCATGAACTTGATAGATCATCCTAATGTTTTACGGGCACATTGCTCTTTTACTACTGGGCATAATCTTTGGGTTGTGATGCCATACATGGCTGGGGGATCTTGCCTTCATATAATGAAATCTGCCTTTCCTGAGGGTTTTGAAGAGCCTGTTATTGCAACCTTATTACGTGAGGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGACATATACACAGGGATGTTAAGGCGGGGAATATTTTGCTTGATTCTAATGGTGCAGTCAAACTGGCTGACTTTGGAGTATCAGCATGTATGTTTGATACTGGAGATAGGCAACGTTCAAGAAATACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCCCTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCGATGAAAGTTTTGCTTATGACTCTGCAAAATGCTCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCGTTCAAAGATTTGGTTGCCACCTGCTTAGTGAAAGACCCAAAGAAGCGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACAAGCACGTGCCAGTGAATATCTAGCTCGCACCATTCTCGATGGCCTTGCTCCATTAGGAGATCGTTTTAGAAACCTGAAGGCTAAAGAAGCAGATTTATTGATGCAGAACAAGGCTCTTTATGAGGATAAGGAGCAATTATCTCAGAAAGAATATATTCGTGGAATCAGTGCCTGGAATTTTAACCTGGAAGATTTAAAAAGTCAAGCTGCTCTTATTCAAGATGCTGACATGCCAAATGCAGAAGAGCCAGATATGGATAAGAAGCAAAAAGACAAATCTGATGACTCCAGGGTTCCTGCAGAGGGGCTATCTCCTGTAGCAGCCAATCATTCAGATGGTGCACCGACACTGGACAAGGAGGATGAATTCAACAATCTTAAGGATTTGGAGAGTTCACTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGTTGTTTTGATGTCTGTGAGGACGATGTCAATAATACTAGTCCAAGAGATTTGGATCATGATTATGGAAGAATTGACAATGAAAGCTCTGGGCCAAGTAGTTCCTTGCCACAAAATGCTATAAGTCCACATAAAAAGTTTTTAAGTGGTTCTTTGCAACCTGATAGTTTTGTTTTTCCCAAAAAGGTTGTTACCGATGGGGACAGGGATTATCTACAAACAAAATATTCTTCTTCTGAGAGGAGTCACAGTGGTCCATTGTTATATCGGCAGAAGAGAGATACCAACAACCTTCAATTGGTTGATGATTCAGAAGGAGCCATTGTCCAGCGTCGGGGGCGATTTAAGGTCACATCGGCAGATCCAAATCCAATGGGTCCTCCAAATTGCACTTCTGGCCCAGTTGGTGGAGGTCCTAGCAGTCCCCCAAATCAGAATTTCATGGCAGCTGCTATTCTTCCATCACTGCAGTGCATCTTGCAACAGAACGGTCTGCAGAGGGAAGAAATTATTAAATTAATAAAGTATGCGGAGCAATCTTGTGGCAAGAGTACAGAATCACCAGAGGCAGGTGCAGGTGATCTTTTGCAGGTTCCACCTGCGACAACTAGGGAGAGAGAGTTGCATTTTCAGGTGATTCAACTCCAACAGAGCATTGGGAGCCTTGTTGAGGAATTGCAAAGACAAAAGATGAAAAATGTTCAGGTATGTTAA 1986 0.4189 MEHVLEKRFPLSAKDYKLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMNLIDHPNVLRAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAFPEGFEEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKDLVATCLVKDPKKRPSSEKLLKHHFFKQARASEYLARTILDGLAPLGDRFRNLKAKEADLLMQNKALYEDKEQLSQKEYIRGISAWNFNLEDLKSQAALIQDADMPNAEEPDMDKKQKDKSDDSRVPAEGLSPVAANHSDGAPTLDKEDEFNNLKDLESSLASFPSKPLQALKGCFDVCEDDVNNTSPRDLDHDYGRIDNESSGPSSSLPQNAISPHKKFLSGSLQPDSFVFPKKVVTDGDRDYLQTKYSSSERSHSGPLLYRQKRDTNNLQLVDDSEGAIVQRRGRFKVTSADPNPMGPPNCTSGPVGGGPSSPPNQNFMAAAILPSLQCILQQNGLQREEIIKLIKYAEQSCGKSTESPEAGAGDLLQVPPATTRERELHFQVIQLQQSIGSLVEELQRQKMKNVQVC. 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00316 661 MobiDBLite consensus disorder prediction 541 566 - -
Seca9g00316 661 MobiDBLite consensus disorder prediction 437 471 - -
Seca9g00316 661 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Seca9g00316 661 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Seca9g00316 661 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Seca9g00316 661 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Seca9g00316 661 MobiDBLite consensus disorder prediction 359 377 - -
Seca9g00316 661 MobiDBLite consensus disorder prediction 451 470 - -
Seca9g00316 661 Gene3D Transferase(Phosphotransferase) domain 1 97 327 - -
Seca9g00316 661 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00316 661 MobiDBLite consensus disorder prediction 356 399 - -
Seca9g00316 661 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00316 661 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 654 IPR047173 GO:0043539
Seca9g00316 661 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00316 661 CDD STKc_OSR1_SPAK 14 277 - -
Seca9g00316 661 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00316 Seca-Chr9 7085632 7101678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00316 1 660 MAP Kinase Kinase Kinase Kinase AT5G14720 68.437 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Seca9g00316 Pkinase 4.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00316 K08835 - gmx:100778837 1140.18