Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00309 ATGCTTATCAAATCTCGTATTATCAACCACAACAAACACACTCGACTAAATTTTCTCTCATTGCTCGCCACTACCTTGGATCCATTAACCTCTTTTGGTTCCTCAGTATACCACCGCCAAAGAGACATTCTTCAAAAGTTCTATCAGGAAAATCGTTTGAGGTTGATGAGTGAATCTTGTGTTCCCAATTGCTTGAAAAATCCAGTCTTTAAGAAAAAAGCATACAGGGGAGTGAGACAAAGGCATTGGGGAAAATGGGTAGTAGAGATTAGACTCCCTCAGAACAGAGTAAGGGTGTGGTTGGGCACTTATGAGACTCCTAAAGCTGCTGCTTATGTTTATGATTGTGCTGCTTCTAAGCTCCGAGGAGAATAA 375 0.4107 MLIKSRIINHNKHTRLNFLSLLATTLDPLTSFGSSVYHRQRDILQKFYQENRLRLMSESCVPNCLKNPVFKKKAYRGVRQRHWGKWVVEIRLPQNRVRVWLGTYETPKAAAYVYDCAASKLRGE. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00309 124 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
Seca9g00309 124 SMART rav1_2 74 124 IPR001471 GO:0003700|GO:0006355
Seca9g00309 124 Gene3D AP2/ERF domain 73 124 IPR036955 GO:0003700|GO:0006355
Seca9g00309 124 ProSiteProfiles AP2/ERF domain profile. 74 124 IPR001471 GO:0003700|GO:0006355
Seca9g00309 124 CDD AP2 75 124 IPR001471 GO:0003700|GO:0006355
Seca9g00309 124 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Seca9g00309 124 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Seca9g00309 124 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 14 124 - -
Seca9g00309 124 SUPERFAMILY DNA-binding domain 74 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00309 Seca-Chr9 6995287 6995661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00309 50 124 AP2-EREBP Transcription Factor Family AT4G39780 56.250 3.93e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca9g00309 AP2 6.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00309 - - csin:114269781 137.502