Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00308 ATGGATAAAAAACCGTGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGTCCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCACGGTGAAGGTGTCTGGAACTCCTTAGCCAAAGCTGCTGGCCTTAAACGTACTGGAAAAAGTTGCCGACTCCGGTGGCTAAATTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCTGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCTAAAATTGCAAAGCATCTACCAGGAAGAACTGACAATGAGATTAAGAACTTCTGGAGGACAAGGATACAAAAGCACATTAAGCAAGCTGAGAACTTCCAACAACAAAGTAATTTAGAGATAAATGATCATCAAACAAGCACTAGCTGCAGCCAAGTGTCCACCATGGCAGAGCCCATGGAGACCTACTCACCATCCTCATATCAAGGAACTTTGGAGCCATTTCCAACTCATCAGTTCCCAACAATCACTGATCATCAATCAAGTTGTTGTACCACTGACAACAACTATTGGAGCATGGAGGATATCTGGTCTATGCAATTACTCAATGGGGATTAA 612 0.4265 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENFQQQSNLEINDHQTSTSCSQVSTMAEPMETYSPSSYQGTLEPFPTHQFPTITDHQSSCCTTDNNYWSMEDIWSMQLLNGD. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00308 203 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Seca9g00308 203 SMART sant 15 65 IPR001005 -
Seca9g00308 203 SMART sant 68 116 IPR001005 -
Seca9g00308 203 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Seca9g00308 203 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Seca9g00308 203 CDD SANT 73 112 IPR001005 -
Seca9g00308 203 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Seca9g00308 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Seca9g00308 203 CDD SANT 18 63 IPR001005 -
Seca9g00308 203 FunFam Myb-related protein 305 73 142 - -
Seca9g00308 203 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Seca9g00308 203 Gene3D - 16 68 - -
Seca9g00308 203 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 143 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca9g00308 203 Gene3D - 73 144 - -
Seca9g00308 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Seca9g00308 203 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00308 Seca-Chr9 6929226 6932883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00308 10 203 MYB Transcription Factor Family AT3G01530 59.487 1.15e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g00308 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00308 K09422 - gmx:778046 372.089