Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00302 ATGGGTCCCACTGCATTGGTACTCTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCAAGAATTTCTTGTGCATGTTTGTATGGAGGTGCGCCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGGTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCATCAGGTCTCTTACCTTGTGCTAGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCCCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTCAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTATTGGCACCAATGGAGAAACATCGACGACTGGAAAATATTTTGCGGTCACAGGATCCAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTTCACGTCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCTCAGGCTGAGAGGGATCATGTGTTGAATCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGAGGACTGGACATCAAAGACATTAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGAACTGGGAGGGCTGGAGCCACTGGTGTAGCTTACACTTTCTTTGGGGATCAGGATGCTAAATATGCTTCAGATCTCATTAAAGTCTTGGAAGGTGCAAACCAGCGAGTCCCTCCAGAAATTCGTGATATGTCATCACGGGGTGGTGGGATGAGCAGATCCAGACGATGGGGTTCTGGCGGCCGTGGTGGACGTGGTGACTCTGGATTTGGTGCAAGGAATTATGACTCTGGATATGGTGGAAGGGGTAATGATGCAGGATATGGTGGAAGAGGTGGTGATTCAAACCACGAAGGAAGGGGTGGGTGGGGGACTGCTCCTGGTAGAGGTGGAGGCCGAGGATTTGACTATGACTCAGAGAGGAATGATCGTGGTCGAAGCCCTGAGAGGGGATCTAGTTGGAGTGATCGCTACAAAAGTGTCAACCGTGATCGCAGCCGAAGTCGTAGTCCTGACAGGCCTGCACCACCTCAACATGCCCAAGTCAGCTTTCACAAAGCAATGATGGATCGCAGTGGAGGTGATGGTGATCGCAACAGGAGCTTTAACCGTGATCGAAGCCGTAGTCCTAGTCCTTATAAACAGGAGAGGGCCCCAACAGTTCGGGAACGATCCCCAGTTCATAGCTTTCATCGATCAATGATGGGACAAGGTCAATCATCCTCTTCATCTCAACGGCAGCGTGGCCCTCATAATGATGAGAGTTGTAAAGAGGAAAAAGGTCATGGATATGCTCGTAGTCCTCACCGAAGTTCACCATCCTCCCCTGGTGGCGGTAGGACCAATAATAGTCCTCAGAAAGAGTGGGGAGGAGGATCTTCAGGTGATGGGAGATATGGTGGATCTCACTCTTCTTACAATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAGGTCAAGATGACGCCATATATCAAAGTGTGGATTAG 1731 0.4789 MGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLENILRSQDPGSKIIIFCSTKKMCDQLARNLSRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLEGANQRVPPEIRDMSSRGGGMSRSRRWGSGGRGGRGDSGFGARNYDSGYGGRGNDAGYGGRGGDSNHEGRGGWGTAPGRGGGRGFDYDSERNDRGRSPERGSSWSDRYKSVNRDRSRSRSPDRPAPPQHAQVSFHKAMMDRSGGDGDRNRSFNRDRSRSPSPYKQERAPTVRERSPVHSFHRSMMGQGQSSSSSQRQRGPHNDESCKEEKGHGYARSPHRSSPSSPGGGRTNNSPQKEWGGGSSGDGRYGGSHSSYNGEEEEGMIPDEEGMIGQDDAIYQSVD. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00302 576 SMART ultradead3 2 152 IPR014001 -
Seca9g00302 576 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 81 89 IPR000629 -
Seca9g00302 576 Gene3D - 1 139 IPR027417 -
Seca9g00302 576 MobiDBLite consensus disorder prediction 433 472 - -
Seca9g00302 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 286 IPR027417 -
Seca9g00302 576 CDD SF2_C_DEAD 149 278 - -
Seca9g00302 576 SMART helicmild6 189 269 IPR001650 -
Seca9g00302 576 Gene3D - 140 310 IPR027417 -
Seca9g00302 576 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 308 - -
Seca9g00302 576 MobiDBLite consensus disorder prediction 511 533 - -
Seca9g00302 576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 164 308 IPR001650 -
Seca9g00302 576 MobiDBLite consensus disorder prediction 377 415 - -
Seca9g00302 576 MobiDBLite consensus disorder prediction 300 576 - -
Seca9g00302 576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 135 IPR014001 -
Seca9g00302 576 MobiDBLite consensus disorder prediction 475 492 - -
Seca9g00302 576 Pfam DEAD/DEAH box helicase 2 124 IPR011545 GO:0003676|GO:0005524
Seca9g00302 576 MobiDBLite consensus disorder prediction 493 509 - -
Seca9g00302 576 FunFam ATP-dependent RNA helicase RhlB 139 311 - -
Seca9g00302 576 Pfam Helicase conserved C-terminal domain 161 269 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00302 Seca-Chr9 6804148 6807140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00302 5 307 Eukaryotic Initiation Factors Gene Family AT3G19760 34.641 1.11e-55 191