Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00300 ATGAAATCTAGGCATGATGAAGAGTTTTCCAGGATGTTTCTTACAAAATCAACATTTGTCATCAATCAACAATTGCTTGGGGAGGAACACCCATTTATCACTGAAAATGATGTTGATCACAACAGGGATGACTCTGATCAAGATGATGATCCAATGAATGAAAATGTGCAAAATGATGGCAACACTGCTAACATAATCAAAGGGCAGTGGTCACCAAGTGAGGACAAAACTCTTATGAATTTGGTGAAACAACATGGGGTGAAGAAATGGGCTTTAATCGCAAGATCAATGGAGAGAAGGATTGGGAAGCAATGCTGA 318 0.3899 MKSRHDEEFSRMFLTKSTFVINQQLLGEEHPFITENDVDHNRDDSDQDDDPMNENVQNDGNTANIIKGQWSPSEDKTLMNLVKQHGVKKWALIARSMERRIGKQC. 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00300 105 CDD SANT 70 105 IPR001005 -
Seca9g00300 105 ProSiteProfiles Myb-like domain profile. 62 105 IPR001005 -
Seca9g00300 105 SUPERFAMILY Homeodomain-like 63 105 IPR009057 -
Seca9g00300 105 MobiDBLite consensus disorder prediction 30 70 - -
Seca9g00300 105 Pfam Myb-like DNA-binding domain 67 105 IPR001005 -
Seca9g00300 105 Gene3D - 60 105 - -
Seca9g00300 105 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 105 IPR017930 -
Seca9g00300 105 MobiDBLite consensus disorder prediction 32 47 - -
Seca9g00300 105 MobiDBLite consensus disorder prediction 54 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00300 Seca-Chr9 6770693 6771322 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00300 61 105 MYB Transcription Factor Family AT5G58850 53.333 4.04e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g00300 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00300 K09422 - ccaj:109801641 70.8626