Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00298 ATGGAGTTTGATCCTAACTTTCGAGGAAAACTCTCATTCTTTTTCCATGAAAATCCTTCTTTAAACCCACAGATTCCGCCAATGTTTTCCTCACAAAGCTCTGTTCTCATTCCACCACCACAAAGTAACCCTTTGATGAGTCACTCCAACAATTCCCACCATTTTGAGGACCATAACCTGAACCCCAATGTGCCAAATCACAACCCTGCTCTTATGATGGAACCTCCTTCCTCTATCACCAATCCATTCTATGATTTCTCAACCCTTTCCTTGGGTGAGGTTGTGACAGTTACACCAAATAACAACAAAATGGATGTTCTGCATGGCAACCATGATGGCGGAATCATCTGGGATTTCTCACAACAAACTGAAATTGATCAATCACTTGGATCTTATTCCTTCCACTCTCAGCATCCCTCACAATCACCACCATCACTATCTGCTAATGAATATGTACTGTTGAGGGTTGGATTTGGAGAGGAACGCACAATTATCACTGAAAATGATCATGATCACATCAGGGATGAATCTGATCATGATGATGATCAAATAGATGAAAATGTGCAAAATGATAGCAACACTGCTAACATAATCAAAGGGCAGTGGTCACCAAGTGAGGACAAGGCTCTTGTGAATTTGGTGAAACAACATGGGGAGAAGAAATGGGCTCTAATTGCAAGATCAATTAATAGAAGGATTGGGAAGCAATGCCGAGAGAGATGGCACAATCATCTCCGACCAAACATTAGGGTCGCTTCCCCTTCCATGGTCATTTTTTTCATATACATGCAAACATATTTTTTTAATCATAAAGACTCATGGACCCCAGAGGAAGACATGATACTGATCAAAACCCACCAAGAAGTTGGAAACAAATGGGCTGAAATTGCAAAAAGAATGCCTGGCAGGAGTGAGAACACCATCAAGAACCATTGGAATGCCACCAAGCGACGCCAAACCTTCAATAGACAAAATAAGAAGCCTGACACTTGTGAAGGATCATTGCTTCGTGCCTACATAAAAAACGTCACTGAAGCTGAAGAAGTTGCTGAATATAAGATGAAGAAATCCATAAGCAACGTGGAGATGAAGATGTTGAGAGGTTGCGATGAACATCTATCTCATATTTTCTTGGAAATTAATCAATTAAATGATGAAGGTTATGGTCATGAGGTGAAGAAGCAACACCATATGATCAATGGAAATGATGGTTACGGGCCAATGCTGCATGCAATCACAAGTGGGTCTGTGAACATTGACTTTGGTGCAATGGTGAAAAGGTTGGGGCTGGAAGATGAGAAGAAGGGGGAGATGGACATGATAAAAGTGGTTACTGCAAAGTTCTAA 1347 0.4105 MEFDPNFRGKLSFFFHENPSLNPQIPPMFSSQSSVLIPPPQSNPLMSHSNNSHHFEDHNLNPNVPNHNPALMMEPPSSITNPFYDFSTLSLGEVVTVTPNNNKMDVLHGNHDGGIIWDFSQQTEIDQSLGSYSFHSQHPSQSPPSLSANEYVLLRVGFGEERTIITENDHDHIRDESDHDDDQIDENVQNDSNTANIIKGQWSPSEDKALVNLVKQHGEKKWALIARSINRRIGKQCRERWHNHLRPNIRVASPSMVIFFIYMQTYFFNHKDSWTPEEDMILIKTHQEVGNKWAEIAKRMPGRSENTIKNHWNATKRRQTFNRQNKKPDTCEGSLLRAYIKNVTEAEEVAEYKMKKSISNVEMKMLRGCDEHLSHIFLEINQLNDEGYGHEVKKQHHMINGNDGYGPMLHAITSGSVNIDFGAMVKRLGLEDEKKGEMDMIKVVTAKF. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00298 448 CDD SANT 202 245 IPR001005 -
Seca9g00298 448 SUPERFAMILY Homeodomain-like 196 312 IPR009057 -
Seca9g00298 448 SMART sant 198 247 IPR001005 -
Seca9g00298 448 SMART sant 270 318 IPR001005 -
Seca9g00298 448 ProSiteProfiles Myb-like domain profile. 271 316 IPR001005 -
Seca9g00298 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 271 320 IPR017930 -
Seca9g00298 448 Gene3D - 198 250 - -
Seca9g00298 448 Gene3D - 272 322 - -
Seca9g00298 448 Pfam Myb-like DNA-binding domain 271 313 IPR001005 -
Seca9g00298 448 Pfam Myb-like DNA-binding domain 199 245 IPR001005 -
Seca9g00298 448 CDD SANT 273 316 IPR001005 -
Seca9g00298 448 ProSiteProfiles Myb-like domain profile. 194 245 IPR001005 -
Seca9g00298 448 PANTHER MYB PROTEIN-RELATED 172 334 - -
Seca9g00298 448 FunFam Transcriptional activator Myb isoform A 198 250 - -
Seca9g00298 448 MobiDBLite consensus disorder prediction 167 188 - -
Seca9g00298 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 249 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00298 Seca-Chr9 6731372 6734346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00298 186 343 MYB Transcription Factor Family AT5G58850 44.706 1.12e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g00298 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00298 - K09422 ccaj:109801641 267.314