Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00278 ATGGCCTCTTCAAATTCTCCATGTGCTGCTTGCAAGTTTTTGAGAAGGAAATGCATGCCAGATTGTGTTTTTGCGCCATATTTCCCACCAGAGGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTTAGCAAGATCCTGAATGAAGTGTTACCCCATCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAAGCAAGGATTAAAGATCCTGTGTATGGCTGTGCTGGGGCAGTTTCAGTGCTCCATAGACAAGTCCTTAGGCTCCAAAAGGAACTTGATTCCACTAATGCAGATTTGATGCGCTTTACTACTTGTAATCAACTTTCAACTCATCATCAAGGTGCAGGGAGAAGGAATATTGAAGGACCTGCTGCTTCCTACCCTCCTCTTGGAGGACACTCTCCTGCTTTTAATTACTATTGGAACAATGATCCTTGTGGGGATGCCTACCACAGAGGTGATATATAA 492 0.4411 MASSNSPCAACKFLRRKCMPDCVFAPYFPPEEPQKFANVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCAGAVSVLHRQVLRLQKELDSTNADLMRFTTCNQLSTHHQGAGRRNIEGPAASYPPLGGHSPAFNYYWNNDPCGDAYHRGDI. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00278 163 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca9g00278 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 113 - -
Seca9g00278 163 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00278 Seca-Chr9 6477235 6479017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00278 4 126 AS2 family AT3G27650 78.862 2.61e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g00278 LOB 5.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00278 - - gmx:100306630 243.047