Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00273 ATGGCCTTGCTGTGTGGTTCAGCTTCGGTGGTGACGTTCCCTTCATCTTCATTCCCTCTTCACAAGAATGCAACAACAAAATCATCCTTTTCTGGCTTCCCACTACCAAAGCTTTCATTATCTTCATCTTCTTCTATTCGTTCCCATTTACCTGCAGCTTTCCGTCTCCATTGTCAGCAGGACTCTGTCTCCGTCGTCCCACAAGAACAAGATCCACGCTTCATTTGCGTCGAACCCGAGCCCCGATTCAAAGGCCCAGACGTTTGGAACAAGACCTATTATCCAAAAGCTGCAGATCATGTCAATACAGAGAAAACATGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACAATTGCTATTCACATCCGAGGGAAAAACCTAGTGACCTATACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTAAATGCAGAAAAGGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGGCACTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTGCCCAGCTGCAGAACAGAATTCCTGAAAGAATCATTGAGCATGCTGTTAGGGGCATGCTTCCAAAAGGGAGGCTTGGCAGGAGACTATTCACCCACCTAAAGGTTTATAGCGGTCCAGATCATCCACATGCGGCACAGAAGCCCATTGATTTGCCAATAAGGGATAAGAGAATACAGTTAGAGAGATAG 732 0.4522 MALLCGSASVVTFPSSSFPLHKNATTKSSFSGFPLPKLSLSSSSSIRSHLPAAFRLHCQQDSVSVVPQEQDPRFICVEPEPRFKGPDVWNKTYYPKAADHVNTEKTWYIVDATDKILGRLASTIAIHIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYSGPDHPHAAQKPIDLPIRDKRIQLER. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00273 243 CDD Ribosomal_L13 107 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca9g00273 243 NCBIfam 50S ribosomal protein L13 101 232 IPR005823 GO:0003735|GO:0005840|GO:0006412
Seca9g00273 243 PANTHER RIBOSOMAL PROTEIN L13 96 238 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca9g00273 243 FunFam 50S ribosomal protein L13 90 234 - -
Seca9g00273 243 SUPERFAMILY Ribosomal protein L13 101 234 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca9g00273 243 Hamap 50S ribosomal protein L13 [rplM]. 107 242 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca9g00273 243 Gene3D Ribosomal protein L13 91 239 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca9g00273 243 ProSitePatterns Ribosomal protein L13 signature. 197 219 IPR023563 GO:0003735|GO:0005840|GO:0006412
Seca9g00273 243 Pfam Ribosomal protein L13 105 223 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00273 Seca-Chr9 6372452 6375568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00273 109 242 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.787 1.87e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00273 K02871 - gmx:100305981 377.096