Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00263 ATGGAATCACCCGGTAACGACCATGTAGTCGGCGGCGGCGGAGAACCCAACGACGTCGTTAGATCCTTTTCCCACAGAGAAGAACACGAGCAACACCACAACAACTCCCAACCTCTTACCGGCGACGGTGCCAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTCATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATAACATATGCAGATCCCTCTGTGGTTGATAAAGTCATTGAGGACTCTCACATCATCAATGGCAAACAAGTTGAAATTAAGCGGACAATACCACGGGGAGCTGTTGGCTCTAAGGATTTTAAGACAAAGAAAATTTTTGTAGGTGGGATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTTTTCACACGATATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCCACCAATCGATCTCGTGGTTTTGGGTTTATCACCTTTGACTCTGAGGAAGCTGTTGATGATCTTCTATCCATGGGAAACAAGATTGAGTTCGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCAGCTACATTATCCAAGCGCTATAATGAGTCAAGGTCTTCATACAGCAGCGGTGGTTACGGAGAAGCTTATGATGGATTTGGTGGTGGCTTTGGTGTTGGGGGTGGTTACAGGTCAGGTGGTGTCTATGGTGGAAGGGGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCCTACAGAGGAGATCCTTCTCTTGGGTTTGCTGGTCGTTATGGTGGAGGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCAAGTGAGAATTATGGGGCATATGGTGGTGCTGGTGCTGGTGGTGGGGGCTCTTCTGGCAGTGGTGCCTATCAAAGTGGCTATGATGCCAGCCTGGGGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGGAGTAGAGGAGGATATGGTGCTGGTCGATATCATCCTTATGGAAGATAG 1131 0.481 MESPGNDHVVGGGGEPNDVVRSFSHREEHEQHHNNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNPPATLSKRYNESRSSYSSGGYGEAYDGFGGGFGVGGGYRSGGVYGGRGGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGGFSRGYDLGGYGGPSENYGAYGGAGAGGGGSSGSGAYQSGYDASLGGGYGGASGGSFYGSRGGYGAGRYHPYGR. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00263 376 MobiDBLite consensus disorder prediction 1 20 - -
Seca9g00263 376 MobiDBLite consensus disorder prediction 210 229 - -
Seca9g00263 376 FunFam Heterogeneous nuclear ribonucleoprotein 1 128 249 - -
Seca9g00263 376 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 376 - -
Seca9g00263 376 Gene3D - 135 218 IPR012677 -
Seca9g00263 376 FunFam Heterogeneous nuclear ribonucleoprotein 1 46 127 - -
Seca9g00263 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 123 IPR000504 GO:0003723
Seca9g00263 376 SUPERFAMILY RNA-binding domain, RBD 124 221 IPR035979 GO:0003676
Seca9g00263 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Seca9g00263 376 SUPERFAMILY RNA-binding domain, RBD 35 125 IPR035979 GO:0003676
Seca9g00263 376 Gene3D - 19 129 IPR012677 -
Seca9g00263 376 SMART rrm1_1 48 119 IPR000504 GO:0003723
Seca9g00263 376 SMART rrm1_1 136 209 IPR000504 GO:0003723
Seca9g00263 376 MobiDBLite consensus disorder prediction 25 45 - -
Seca9g00263 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 205 IPR000504 GO:0003723
Seca9g00263 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00263 Seca-Chr9 6096123 6099845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00263 47 232 Eukaryotic Initiation Factors Gene Family AT1G71770 26.020 6.20e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00263 K12741 - gmx:100793209 484.182