Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00261 ATGGAGTCACCTGTCAATGGAGTTGATTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACGTCATGATCCTCCTTCAACATCTGGGACTCCCTGTCCTTCCCTACCTCCCTTGAGAGCATCTAGAAATCATGGGGCTTCTTCCACATCTTTCTTGGTGGGTCACCATAATAATGGAACAAAGACCCTCCACCATCAAAACAGCTATGTAATGAATCAAAAGCATTCCTATCAGGAAGGCAACAATGTGGAGCATGAAGGATTGCAAACAAAATTATGCAGCAAACAACCATTTGGTGATTCCAAGAATTGTGAATTAAGTGGTGTATTAGAATCTGAGAATTGCAGCTTAGTAGGTCCATCAAAAAGAGCTGTTGTTAATCAAGCAAAGAGTTGCTGTCAATCAGATGTTACTTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGCCACTGTCTATTCAGAAGCCAAAGAAAGTTTCACCAATACTGAAGTCAGTGAGTGTGCTAGCGTTGATAAGTCATGTGAAAGTGGAGAAGTTACAAATTCTTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCCAGTACTGGAAGTGATGTTAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGCTTTGTATAAACCCCATAAGGCAAATGATATAAGATGGGAAGCAATTCAAGCCATCCGAGCTCGTGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGGAGTGTGTATCTAGCAGAACTTAGTGGAACAAGGACTTCTTTTGCCATGAAAATCATGAACAAAACCGAGCTGGCAGGACGCAAGAAGCTTCTGAGGGCTCAGACAGAAAGAGAGATATTGCAATCTTTAGATCATCCATTTCTACCCACATTATATACACACTTTGAGACAGAGACATTCTCTTGCTTGGTAATGGAGTTCTGCCCTGGTGGAGACCTGCATGCACTCAGGCAAAGACAACCTGGGAAATATTTCTCAGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTTAAACCTGAGAATGTATTGGTGAGAGAAGATGGTCATATAATGCTGTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTTTAGTAAAGTCATCAAACTCTAGCATGGAAACAAAAAGCTCAGGATACTGCATTCAGCCTGCTTGCATTGAGCCAACATGTGCAATGCAGCCAGACTGCATCCAACCTGCATGCTTTACACCGCGATTTCTGTCTGGCAAATCCAAGAAAGGAAAGAAATTCAAATCAAAGAATGATATGCATCATCAGGTGACTCCTCTCCCTGAGCTAATAGCCGAACCAACAAACGCGCGATCAATGTCCTTTGTGGGTACACACGAGTACTTGGCGCCTGAAATCATTAAGGGTGAAGGACATGGCAGTGCTGTAGACTGGTGGACATTTGGTATATTCTTATACGAGCTTCTATTCGGTAGAACACCATTCAAGGGTTCTGCGAATCGAGCAACATTGTTTAATGTGGTAGGGCAGCCCTTGAGGTTTCCAGAATCTCCTACTGTCAGCTTTGCTGCCAGGGACTTGATAAGGGGTTTACTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGCGGAGCTACAGAAATTAAACAACATCCATTCTTTCACAATGTGAACTGGGCACTGATTCGTTGTGCTAATCCTCCAGAGGTGCCAAGACAGACCATGAAACCACCCCAAACTGAAAAGGAGCTTGGTGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA 1884 0.4315 MESPVNGVDSLSEVQNSVSGVRHDPPSTSGTPCPSLPPLRASRNHGASSTSFLVGHHNNGTKTLHHQNSYVMNQKHSYQEGNNVEHEGLQTKLCSKQPFGDSKNCELSGVLESENCSLVGPSKRAVVNQAKSCCQSDVTFCPSPQNSFYSATVYSEAKESFTNTEVSECASVDKSCESGEVTNSCDFNESRKTSICRASTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKIMNKTELAGRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNSSMETKSSGYCIQPACIEPTCAMQPDCIQPACFTPRFLSGKSKKGKKFKSKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQTMKPPQTEKELGVKPSGNYLDIDFF. 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00261 627 MobiDBLite consensus disorder prediction 42 64 - -
Seca9g00261 627 SUPERFAMILY Protein kinase-like (PK-like) 223 605 IPR011009 -
Seca9g00261 627 SMART serkin_6 246 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00261 627 FunFam Serine/threonine-protein kinase D6PK-like 244 329 - -
Seca9g00261 627 Gene3D Transferase(Phosphotransferase) domain 1 326 395 - -
Seca9g00261 627 Pfam Protein kinase domain 480 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00261 627 Pfam Protein kinase domain 247 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00261 627 CDD STKc_phototropin_like 244 601 - -
Seca9g00261 627 PANTHER FLIPPASE KINASE 1-RELATED 95 606 - -
Seca9g00261 627 MobiDBLite consensus disorder prediction 1 64 - -
Seca9g00261 627 MobiDBLite consensus disorder prediction 1 29 - -
Seca9g00261 627 Gene3D Transferase(Phosphotransferase) domain 1 477 600 - -
Seca9g00261 627 FunFam serine/threonine-protein kinase D6PK-like 330 397 - -
Seca9g00261 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
Seca9g00261 627 FunFam serine/threonine-protein kinase D6PK-like 478 601 - -
Seca9g00261 627 Gene3D Phosphorylase Kinase; domain 1 244 325 - -
Seca9g00261 627 ProSiteProfiles Protein kinase domain profile. 246 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00261 Seca-Chr9 6056501 6061041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00261 154 627 AGC Kinase Gene Family AT5G47750 70.935 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca9g00261 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00261 K08286 - gmx:100810909 1082.4