Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00259 ATGGAGAAAAAAGAGGTTGTGCAAAACCTTTGGAATGGTGATAGAGACGCTCAAATTCAAGCAGCTATGGAACTAAGTAGATTATGCAGTAAGCAGAGGCACAATTTAGCAGAAAGTGGAGTTATGGTTCCTCTAGTTTCCATGCTTCATTCTGAAAACTATGAAGCCATAGAAGCTGCTCTGTGTGCTCTTCTCAGCCTTTCCTTTGGCAGTGAACGAAACAAGATTCGGATAATCAAGTCTGGAGCTTTGCCAGTTTTGCTGAATCTCCTCCATTGTCAAAGCCAGACAGTAATACAATTGACAGTAGCTGCTATGCTAACACTCTCTTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCATCTGGGGCTGTTCAACTCTTGGCTGAACTTGTCCATACCAGTAGCACTCAGTCTCAGCTTGATGCTATAGCTACTCTTCACAATCTGACAACTTGCCAAGAGCTTATTCCATTGATTGTCTCTTCTGGTGTTATATTCTCCTTGCTTGAACTGATCCACAGCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAATATTGTCTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTACTGGGGGAGCAATTCGGATATTGGTTGAGACTATTGAAGATGGATCTTTACTAGGCAAAGAGCATGCAGTGGGTATACTTCTCCTTATATGCCAGAGCTGCAGAGAAAAATACAGAGGATTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAGTTGTTGTTGTTACTCAGGGATTGCTCCAATTATAGCTCAAGACGTAAACAAATTAATCATGAGCTTATAGAACAGATAATGGAAGAAATTGATGCAGAAGGAGAGAAATTGGCAGATACTACTTTGAGGTTAGTAGAGGAGATGATTGCAAAGCTCAATACATAA 987 0.4154 MEKKEVVQNLWNGDRDAQIQAAMELSRLCSKQRHNLAESGVMVPLVSMLHSENYEAIEAALCALLSLSFGSERNKIRIIKSGALPVLLNLLHCQSQTVIQLTVAAMLTLSSCKANKVAIASSGAVQLLAELVHTSSTQSQLDAIATLHNLTTCQELIPLIVSSGVIFSLLELIHSSVKSSPLVEKAIGLLENIVSSSESALCEAASTGGAIRILVETIEDGSLLGKEHAVGILLLICQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRRKQINHELIEQIMEEIDAEGEKLADTTLRLVEEMIAKLNT. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00259 328 FunFam U-box domain-containing protein 4 201 317 - -
Seca9g00259 328 SMART arm_5 71 111 IPR000225 GO:0005515
Seca9g00259 328 SMART arm_5 29 69 IPR000225 GO:0005515
Seca9g00259 328 SMART arm_5 153 195 IPR000225 GO:0005515
Seca9g00259 328 SMART arm_5 112 152 IPR000225 GO:0005515
Seca9g00259 328 Gene3D - 118 201 IPR011989 -
Seca9g00259 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 82 124 IPR000225 GO:0005515
Seca9g00259 328 SUPERFAMILY ARM repeat 5 310 IPR016024 -
Seca9g00259 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 208 IPR000225 GO:0005515
Seca9g00259 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 40 82 IPR000225 GO:0005515
Seca9g00259 328 Pfam Armadillo/beta-catenin-like repeat 72 105 IPR000225 GO:0005515
Seca9g00259 328 Pfam Armadillo/beta-catenin-like repeat 30 68 IPR000225 GO:0005515
Seca9g00259 328 FunFam U-box domain-containing protein 4 4 197 - -
Seca9g00259 328 PANTHER U BOX DOMAIN-CONTAINING 5 282 - -
Seca9g00259 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 165 IPR000225 GO:0005515
Seca9g00259 328 Gene3D - 1 117 IPR011989 -
Seca9g00259 328 Gene3D - 202 312 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00259 Seca-Chr9 6044970 6046932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00259 5 281 U-box Gene Family AT3G54790 32.740 2.20e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00259 - - gmx:100778534 536.184