Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00241 CCCAGTCAGATTCAAGGTTCGGATGCCGAGTCTCTGGAAGTGTTTCCCGCTCACACACTGAGTCTGAGTCTTGATTTTTTCTCTCACTACCTTACTCCTTCGCCACGACACCATAAATACTCACAAGTCACCTCACTAAACGCGTCTTTCTCTTTTGAGTTCTGTCCCCTTTGGAAGCTCTGTTTCTTCTTCTTCTTCTCTAATAGCATGGCTAGGAGTTGGGTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAACACTACTCTGTCAACAGATGATCAAATCAAGGACTGTGGAGCATTTCGTGAATGCCCAAAATGTCACTATCATATTGATAACAGCGATGTTTCTCCTGAGTGGCCTGGATTTCCTGCTGGTGTAAAGTTTGATCCTTCTGATGTTGAACTTATAGAACATTTAGCAGCAAAGTGTGGCATTGGAAACAGAGAGCCACACATGTTTATCCATGAGTTCATCCCAACTCTGGAAGGAGACAAAGGTATTTGCTACACACATCCAGAAAAACTTCCAGGTGCTAAGAAGGATGGCAGCAGTGTTCATTTCTTCCACAAAACAGTTTATGCTTATGCTACTGGACAAAGAAAGCGTAGAAAGATCCATCATAATGGTTTGAATGAGGAGCATGTCCGCTGGCACAAGACTGGTAAGACCAAAGCTATAATAGAAGATGGAGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATGTAAGATCTAAGAAAGGATCTAAGCCAGAAAAGTCCAATTGGGTGATGCATCAGTACCATCTAGGGAGTGAAGAAGATGAGAAGGATGGTGAGTATGTTGTTTCAAAAATCTTTTATCAACAGCAGAAACAGACTGAGAAAATTGAGGAGATTCCAGTAGTTGAAGATTCGGACATGGCATTAAGAACTAGTCCAAGAACCCCAAAACCAAATCCCCCCACTCGACCTCTAACAGGCAAATGTGTTGACTATGATGACAATTTTGATGAAAATGAACTTCCATCATTCATCCAGGATGCTAAGCCTATACCTGAAGAATCACATGCTCCACCATCTGATGTTAAGAATGAGGAAAATATAGGCGACCCTGCATGTTTAGCTGGTGAATCACAGGCTGACTGTGACTTTGATGGTTTGGATGATATCTTATTATGCAAGGAGATGTTAGATTCTTCTGCTGTCATAAATGATTCTGGATTGAACTCCACTTTTAATAGCTTTGCTTGCAATGAAAATGAGGCATTTTATGGAATTCCTGTCTTGGACACCTTGGAATTGGATACTCCTCCAGATTTTGATCTTTCTAATTTGCAATTTTGTTCTCAAGACAGTAGTATCCTTCAGTGGATGGGCAGATTATGA 1374 0.4083 PSQIQGSDAESLEVFPAHTLSLSLDFFSHYLTPSPRHHKYSQVTSLNASFSFEFCPLWKLCFFFFFSNSMARSWVIDIGGFAKKVKNTTLSTDDQIKDCGAFRECPKCHYHIDNSDVSPEWPGFPAGVKFDPSDVELIEHLAAKCGIGNREPHMFIHEFIPTLEGDKGICYTHPEKLPGAKKDGSSVHFFHKTVYAYATGQRKRRKIHHNGLNEEHVRWHKTGKTKAIIEDGVHKGFKKIMVLYVRSKKGSKPEKSNWVMHQYHLGSEEDEKDGEYVVSKIFYQQQKQTEKIEEIPVVEDSDMALRTSPRTPKPNPPTRPLTGKCVDYDDNFDENELPSFIQDAKPIPEESHAPPSDVKNEENIGDPACLAGESQADCDFDGLDDILLCKEMLDSSAVINDSGLNSTFNSFACNENEAFYGIPVLDTLELDTPPDFDLSNLQFCSQDSSILQWMGRL. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00241 457 FunFam NAC domain-containing protein 8 133 288 - -
Seca9g00241 457 MobiDBLite consensus disorder prediction 301 322 - -
Seca9g00241 457 Gene3D NAC domain 133 289 IPR036093 GO:0003677|GO:0006355
Seca9g00241 457 Pfam No apical meristem (NAM) protein 125 265 IPR003441 GO:0003677|GO:0006355
Seca9g00241 457 ProSiteProfiles NAC domain profile. 124 284 IPR003441 GO:0003677|GO:0006355
Seca9g00241 457 MobiDBLite consensus disorder prediction 341 368 - -
Seca9g00241 457 SUPERFAMILY NAC domain 108 284 IPR036093 GO:0003677|GO:0006355
Seca9g00241 457 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 72 354 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00241 Seca-Chr9 5651670 5655305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00241 93 296 NAC Transcription Factor Family AT1G28470 53.810 5.77e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g00241 NAM 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00241 - - gmx:100780662 613.224