Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00240 ATGGGATCCGGCAATGAGGTTCACTCGGTCGGGGAGTTCAATTTAGATGCCAAGTGGCTTGTAGATCCCAAACAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCCCATGCCAAAGTCTATGAAGGAAATTTTTCTGATTGCAGATACAAAAATCAGAATGTTGCTGTTAAGATTATCAACAAGGGAGAAACCCCAGAGGAGATTTCAAGGAGAGAGGCTCGGTTTGCTAGAGAGGTTGCTATGTTGTCCAGAGTTCAACACAAAAATTTGGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTAACTGAACTTCTATTGGGTGGAACATTGCGCAAATATCTCTTGAGTATGCGTCCAAAATGCTTGGATATTCGAGTGGCTGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCCCATGGAATCATTCACCGTGACCTTAAGCCTGATAACTTGATCTTGACAGCAGATCACAGGACTGTTAAACTTGCTGATTTTGGTCTGGCCAGAGAAGAGTCCTTAACAGAGATGATGACGGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCATAAGGTGGATGCTTACAGCTTTGCAATTGTGTTATGGGAGCTCATCCATAATAAGTTGCCCTTTGAAGGGATGTCTAATCTACAGGCAGCCTATGCAGCTGCTTTTAAGAATACAAGGCCTAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAGGAGGATCCAAATGATAGACCCAATTTTAGCCAAATCATACAGATGCTCCTTAGATATCTCTCCACTATTTCACCACCAGAGCCAGTTGTCCCTATGCGGATGAATTCATCTGAGAATGCTGTATTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGACTCTGGAGAAACCCCAAAAGCCAATGTGGAAGATAGGTCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1074 0.4302 MGSGNEVHSVGEFNLDAKWLVDPKQLFVGPKIGEGAHAKVYEGNFSDCRYKNQNVAVKIINKGETPEEISRREARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLSMRPKCLDIRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHRTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQIIQMLLRYLSTISPPEPVVPMRMNSSENAVLPPESPGTSALMLGRDDSGETPKANVEDRSKGFFFCFNQCY. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00240 357 Gene3D Transferase(Phosphotransferase) domain 1 112 311 - -
Seca9g00240 357 ProSitePatterns Protein kinases ATP-binding region signature. 32 58 IPR017441 GO:0005524
Seca9g00240 357 FunFam serine/threonine-protein kinase HT1 112 313 - -
Seca9g00240 357 Pfam Protein tyrosine and serine/threonine kinase 29 291 IPR001245 GO:0004672|GO:0006468
Seca9g00240 357 PRINTS Tyrosine kinase catalytic domain signature 107 120 IPR001245 GO:0004672|GO:0006468
Seca9g00240 357 PRINTS Tyrosine kinase catalytic domain signature 145 163 IPR001245 GO:0004672|GO:0006468
Seca9g00240 357 PRINTS Tyrosine kinase catalytic domain signature 219 241 IPR001245 GO:0004672|GO:0006468
Seca9g00240 357 PRINTS Tyrosine kinase catalytic domain signature 262 284 IPR001245 GO:0004672|GO:0006468
Seca9g00240 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Seca9g00240 357 ProSiteProfiles Protein kinase domain profile. 26 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00240 357 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 291 - -
Seca9g00240 357 CDD STKc_MAP3K-like 32 291 - -
Seca9g00240 357 SMART serkin_6 26 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00240 357 FunFam Kinase suppressor of Ras 1 15 110 - -
Seca9g00240 357 SUPERFAMILY Protein kinase-like (PK-like) 18 317 IPR011009 -
Seca9g00240 357 MobiDBLite consensus disorder prediction 315 341 - -
Seca9g00240 357 Gene3D Phosphorylase Kinase; domain 1 14 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00240 Seca-Chr9 5644894 5648753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00240 9 357 MAP Kinase Kinase Kinase AT5G50180 77.077 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca9g00240 PK_Tyr_Ser-Thr 5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00240 - - gmx:100792887 650.588