Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00235 ATGCTCAAATCATTATCTCTAACCCAATTATCTTCTCTCATACCCCATAACCATGCCCACCGAGTCATATTCTCTGCCAAATTGCTCTCTCACAAACACCTATCACCATGCCTACAATTGCGACTTCTCTCCACCAATCCCACCCCATACCCACTTCAATACGAGATGATCATCAACCGCCCCGACATCCCCAAAACTCGCCGTCGACCGGTTCGACCCAACGACTCCCCTTCTCAGACCGCTCCCGAACCGGACGAACCCACTTCCCACTCCGACCCATTGCACAACTGGGTCCATGGGAAACTGGCTTCCGAGGCCGAACCGGACCAACCCGGTTCGCCAAAATTGGAACTTGACAAGGCCCAGAGAAAGTACTACAACAAACGGAGGAAGAGGATGTATGGGTCCGACTCCGACGAAGGAAACCGGCGACCCGAGGAGAAGTTCGTGGAGCTGAAGCCTGAGGTGGTGGAGCTTCCCACGTTGCACAGGAGAGAGGAGGAATTGTATTTCTATGATGCTTTTGCTTATCCATGGGAGAAGGAGAAGCACTATAAGATGGTTTATCAGTTGGAGAAGAAGTACTTCCCTGACCAATGCCTTGACAAAGCGTTTCTCCAACCTGGACAACAATCAAATTCAGATTTAAATGCAAATGCAAATGCAAAGTTTAAGAAGAAGAAAGTTGGGGGTGTTAATAAAGACGGGATTGGTGATAACAAGTTGGTGTTTTTTGAGGAGAAAAGGGAGGAAGAAAAAGCAAAGGATAAGGATGATGATTCATCATGTAAAGATCTCACGGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTGAAGAAAGTTCCCAATAAGGATGCTCAAGTTGGTGAGCCATTTCTTTCTTCAAGGAGAACTGGCCTCCCTCCCATTTGGGATAGTCCACATGGCACCGTGCTTTTGGTTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGCCACGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGAGAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCGCCAGTCATTCAGCGAGAGCCATGGGAGCACATCAAAGATGATGACATAAAGAAAAATGCTTTGTCCTTTTGTGGGGAGATTTGGCAAGTGCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGTATTTCAATATTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATCTTTAGAGTGACGTGTTCTAAAGGGACATACATTAGGTCACTCTGCGCGGATTTTGGGAAGGCTCTTGGCAGCTGTGCTCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCTGATGATGCATGGGAATTTCAAGAGCTGGAAGAGGCTATTACCAAAAGTTATCTCTAA 1587 0.4581 MLKSLSLTQLSSLIPHNHAHRVIFSAKLLSHKHLSPCLQLRLLSTNPTPYPLQYEMIINRPDIPKTRRRPVRPNDSPSQTAPEPDEPTSHSDPLHNWVHGKLASEAEPDQPGSPKLELDKAQRKYYNKRRKRMYGSDSDEGNRRPEEKFVELKPEVVELPTLHRREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGQQSNSDLNANANAKFKKKKVGGVNKDGIGDNKLVFFEEKREEEKAKDKDDDSSCKDLTEKKVEEFFKGLKKVPNKDAQVGEPFLSSRRTGLPPIWDSPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDDDIKKNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFQELEEAITKSYL. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00235 528 Hamap tRNA pseudouridine synthase B [truB]. 308 528 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca9g00235 528 NCBIfam tRNA pseudouridine(55) synthase TruB 310 519 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca9g00235 528 Pfam tRNA pseudouridylate synthase B C-terminal domain 481 524 IPR032819 -
Seca9g00235 528 Pfam TruB family pseudouridylate synthase (N terminal domain) 330 480 IPR002501 GO:0006396
Seca9g00235 528 SUPERFAMILY Pseudouridine synthase 310 523 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca9g00235 528 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 194 526 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca9g00235 528 MobiDBLite consensus disorder prediction 61 96 - -
Seca9g00235 528 CDD PseudoU_synth_EcTruB 311 522 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca9g00235 528 MobiDBLite consensus disorder prediction 127 146 - -
Seca9g00235 528 MobiDBLite consensus disorder prediction 131 146 - -
Seca9g00235 528 Gene3D Pseudouridine synthase 305 527 - -
Seca9g00235 528 FunFam tRNA pseudouridine synthase B 305 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00235 Seca-Chr9 5572482 5580802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00235 311 502 NAC Transcription Factor Family AT3G57150 33.333 8.32e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00235 K03177 - cave:132182858 699.123