Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00218 ATGTCATCCTCTGGCACATGGAGTGTTCAAGACAATAAAGCTTTTGAAAGCGCTTTAGCGGTTTATGACAAGGATACCCCTGACCGTTGGAGCAACATTGCAAAGGCTGTTGGTGGAAAAACTCCAGAAGAAGTGAAGAGGCACTATGAGGTCCTTGTGGAGGACATTAACCGTATTGAGTCAGGGCAAGTGCCCTTTCCATCATATAGGAACCCCAAAGAAGGCGCTTAA 231 0.4632 MSSSGTWSVQDNKAFESALAVYDKDTPDRWSNIAKAVGGKTPEEVKRHYEVLVEDINRIESGQVPFPSYRNPKEGA. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00218 76 Gene3D - 1 66 - -
Seca9g00218 76 FunFam Transcription factor SRM1 1 66 - -
Seca9g00218 76 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca9g00218 76 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 72 IPR044636 GO:0003700
Seca9g00218 76 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Seca9g00218 76 SMART sant 3 55 IPR001005 -
Seca9g00218 76 CDD SANT 6 53 IPR001005 -
Seca9g00218 76 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Seca9g00218 76 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00218 Seca-Chr9 4730337 4730567 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g00218 Myb_DNA-binding 6.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00218 - - aprc:113867554 132.88