Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00166 ATGCAGAAGTTGGAGGGGGTGTCAAGGAGGATAACTGATTTGACAAGTGATGATATATGTGCATTGGAATTCAGTAGTGAAAATGATGCTTTCAATTTTTACTTTTCTTATGCAAGATGTCATGGATTTGCTGTGAGGAGGGATGCTGTAATTAAAGACAGTAAAGGTATGCTCATAATGCGACAGTTTTTATGTAGTAGGGCTGGTTTGAGGGACAAAAAGCATTTGATTAGGTTAGATCGGAAAAAGGAACATAGGCCTCTTACTCGAACAAATTGTCAAGCTAAGTTGAGGGTTCGGTTTGATTATAAGACTGGGAAATTTAAGGTTATTTCCTTTTTAGACTCTCATAACCATGAATTGACCCCTGCTAAATTTGTACCTTTAATGCCTGCATATCGTGGTTTGAGTGATGGGGACAAAGCCCAAGTTGATGCATTGCATTCTCATCGTGTTAGACCATGTCAGATAATGGGTTTTCTTGTTGATCAAAAAGGAGGTTATAGAAACGTTGGTTTTTCAAAGAAAGATTTATACAACTACATAGATGAGGTTAAGAGGGGTCAGATAAAAGATGGGGATGCAGTGGCTGGGTTAAGTTATTTGCAAGGAAAGGCAGATAATAATCCAATGTTTTTTTCAAGATTCTTATGTTTTGATAATGGGAAACTCACTCATCTGTTTTGGTGTGATGAAATAAGTCGGGTAGACTATCAATTTTTTGGTGATGTACTTGCATTTGATGCAACCTACAAGAAGAATAGGTATAAATATCCACTGGTGATTTTTTCTGGCAAAAATCACCACTCTCGGACAATTATATTTGGGTGTGCACTCATTGCTGATGAAACAATCGATACTTATAAGTGGGTTTTAAGAATGTTTTCAGAAGCAATGTTCAACAAGCATCCAGCTGTAGTGGTGACTGATGGTGATGGTGCAATGAGGGAAGCTATTAAGGTAGTATTTCCAAATGCATCTCATAGGTTATGCGGTTGGCATTTTAATAAAAATGCATGTGAAAATGTTAAGAATCCTAAATTCTTGGATGATTTCAAGAAAGCAATGTATAATAATTTCACACCAGAAAAATTTTAA 1098 0.3634 MQKLEGVSRRITDLTSDDICALEFSSENDAFNFYFSYARCHGFAVRRDAVIKDSKGMLIMRQFLCSRAGLRDKKHLIRLDRKKEHRPLTRTNCQAKLRVRFDYKTGKFKVISFLDSHNHELTPAKFVPLMPAYRGLSDGDKAQVDALHSHRVRPCQIMGFLVDQKGGYRNVGFSKKDLYNYIDEVKRGQIKDGDAVAGLSYLQGKADNNPMFFSRFLCFDNGKLTHLFWCDEISRVDYQFFGDVLAFDATYKKNRYKYPLVIFSGKNHHSRTIIFGCALIADETIDTYKWVLRMFSEAMFNKHPAVVVTDGDGAMREAIKVVFPNASHRLCGWHFNKNACENVKNPKFLDDFKKAMYNNFTPEKF. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00166 365 PANTHER OS01G0519700 PROTEIN 19 365 - -
Seca9g00166 365 Pfam MULE transposase domain 244 338 IPR018289 -
Seca9g00166 365 Pfam FAR1 DNA-binding domain 32 122 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00166 Seca-Chr9 3954722 3955819 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g00166 MULE 3.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00166 - - ccaj:109794460 493.812