Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00155 ATGGCACTCATCATCAGTGGTTTAATGCATTGGTGGCCATTCATATTCATATTCATCTTATCATTCTTTGTTGTTGCCTCTTCTGCCGTTTCTTCAGAGACAGAGATGCTTCTCAAATTTAGGGAGTCCCTAGAAAACAACAATGCATTATCTGCATGGAATGCATCAACCCCTCCATGCACAGATGATCATGCCAATTGGAAAGGAATTTTGTGTTATAAAGGACATATATGGGGCTTGAAGCTTGAGAAGATGGGGCTCAAAGGGGTCATTGATGTCTCCTCCCTCAAGGATTTACCTTATCTCAGAACCATAAGTGTTATGAACAATGATTTTGACTCCGAATGGCCAGAGTTTAACATGTTAGTAGGTTTGAAAACGATTTACCTCTCAAATAATAAGTTTTCTGGGGAGATTCCTTCTCAAGCTTTTCAGGGTATGCAATGGTTGAAGAAAATTCATTTGTCACACAACCAGTTTTCAGGTCCTATCCCATCTTCGGTAGCTATGTTGCCTAGGCTTATGGAGTTGAGGTTGGAGGGAAACCAATTCACTGGCTCCATTCCCAAATTTCATCAAACATTAAAATCATTTAGTGTAGCTAATAATCAATTAGAGGGAGAAATACCAGCCAGCCTTAGTAAGTTGCCAGCTTCAGCTTTCTCTGGTAATGAAGATCTATGTGGAGGTCCAATAAGTGCATGCTCCTCCAAAAAGTCAAAAACTGTCACTATTGTTGTGGCTGTGGTTCTTGTCATTGTTGCACTGATTGTGATTGGTGCAGTAATATTATTGATCCTTCGTAGAAGAAGAAAACAAGCATCTGAAGTGTCAACTGAAAATCGACCCACCAGTCTCCAAAAGACAGGGGGAGTATCAGAGGAGGGGAGTCATAGGTCCTCAAGGTCACAAGGCTCCACTCGCAGCAGCAGCAGAAAAGGAGACAACATGAAGTTATCCTTTGTGAGGGATGACAGAGAGCACTTTGATTTGCAAGAACTGCTTAGAGCCTCTGCTGAGATTTTGGGTAGTGGTTGTTTCAGTTCTTCATACAAGGCTGCTTTGATAAATGGCCCATCTGTGGTGGTGAAGAGATTCAAGCAAATGAACAATGTAGGTAGGGAAGAGTTTCAGGAGCACATGAGAAGGTTAGGAAGGTTGAGTCATCCTAATCTGCTTCCTCTAGTGTCTTACTACTATAGAAAGGAAGAGAAGCTCTTGATTGGAGACTTTGTTCAAAATGGCAGCTTGGCTGCTCACCTTCACGGACACCAATCTATAGGCGAACCAAGCCTTGATTGGCCAAGCCGGTTGAAGATTGTGAAAGGTGTAGCAAAAGGTCTTGAATATCTATACAAGGAGATGCCAAGCCTAATTACACCCCATGGTCATCTTAAATCCTCCAATGTTCTTCTAAGTGAGAATTTGGAGCCAATTCTGAATGACTATGGTTTGGTACCAGTGATAAACCAGGATCTTGCTCCTGACATCATGGTGATCTACAAGTCCCCAGAATATTTGCAACATGGCCGTGTTACAAAGAAGACAGATGTGTGGAGTCTTGGGATACTGATTTTGGAGATTCTAACAGGTAAGTTCCCTGCAAACTTTCTACCACAAGGTAAAGCAAGTGAGTTGAGTTTGGCAACTTGGGTGGAGTCAATTGTCCCTGAAAATTGGAGTAGTGAGGTGTTTGATAAAGAAATGGGGGCAACAAAAAACAGTGAGGGGGAGATGGTGAAGCTTTTGAGGATTGCATTGAATTGTTGTGAAGGGGATGTGGATAAGAGATGGGATTTGAAAGAAGCTGTAGACAAAATTCAAGAGGTAAAAGAAAGAGATAATGATGAGGATTTTGCTAGTGAAGCTGACAGGAAATCAAAAGATTCATCAGGTGAAGTTAGTTTCTCCATAAATGGTTGA 1923 0.4171 MALIISGLMHWWPFIFIFILSFFVVASSAVSSETEMLLKFRESLENNNALSAWNASTPPCTDDHANWKGILCYKGHIWGLKLEKMGLKGVIDVSSLKDLPYLRTISVMNNDFDSEWPEFNMLVGLKTIYLSNNKFSGEIPSQAFQGMQWLKKIHLSHNQFSGPIPSSVAMLPRLMELRLEGNQFTGSIPKFHQTLKSFSVANNQLEGEIPASLSKLPASAFSGNEDLCGGPISACSSKKSKTVTIVVAVVLVIVALIVIGAVILLILRRRRKQASEVSTENRPTSLQKTGGVSEEGSHRSSRSQGSTRSSSRKGDNMKLSFVRDDREHFDLQELLRASAEILGSGCFSSSYKAALINGPSVVVKRFKQMNNVGREEFQEHMRRLGRLSHPNLLPLVSYYYRKEEKLLIGDFVQNGSLAAHLHGHQSIGEPSLDWPSRLKIVKGVAKGLEYLYKEMPSLITPHGHLKSSNVLLSENLEPILNDYGLVPVINQDLAPDIMVIYKSPEYLQHGRVTKKTDVWSLGILILEILTGKFPANFLPQGKASELSLATWVESIVPENWSSEVFDKEMGATKNSEGEMVKLLRIALNCCEGDVDKRWDLKEAVDKIQEVKERDNDEDFASEADRKSKDSSGEVSFSING. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00155 640 FunFam Nuclear pore complex protein NUP107 30 190 - -
Seca9g00155 640 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Seca9g00155 640 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 615 IPR046959 -
Seca9g00155 640 FunFam Pollen receptor-like kinase 1 412 621 - -
Seca9g00155 640 SUPERFAMILY L domain-like 32 216 - -
Seca9g00155 640 FunFam pollen receptor-like kinase 1 305 411 - -
Seca9g00155 640 MobiDBLite consensus disorder prediction 276 317 - -
Seca9g00155 640 ProSiteProfiles Protein kinase domain profile. 336 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00155 640 MobiDBLite consensus disorder prediction 278 316 - -
Seca9g00155 640 MobiDBLite consensus disorder prediction 612 640 - -
Seca9g00155 640 Gene3D Transferase(Phosphotransferase) domain 1 412 634 - -
Seca9g00155 640 Gene3D Phosphorylase Kinase; domain 1 301 411 - -
Seca9g00155 640 Gene3D Ribonuclease Inhibitor 128 239 IPR032675 -
Seca9g00155 640 MobiDBLite consensus disorder prediction 612 631 - -
Seca9g00155 640 SUPERFAMILY Protein kinase-like (PK-like) 340 608 IPR011009 -
Seca9g00155 640 Pfam Protein kinase domain 339 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00155 640 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Seca9g00155 640 Gene3D Ribonuclease Inhibitor 26 127 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00155 Seca-Chr9 3742758 3746918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00155 16 637 Receptor kinase-like Gene Family AT5G35390 52.824 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca9g00155 Pkinase 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00155 - - gmx:100804368 844.343