Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00152 ATGAAGACGCAACCTCAACCAGACGGTGCCTCCGCCGCACCTAATCCCTGCGAAGGCGCAGAGAAGAAGAGCATCAACCCGGAGCTATGGCAAGCTTGTGCGGGGCCACTCGTGAATCTCCCTCCCGCTGGTACTCACGTTATCTACTTCCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTCTGAAGAAAGATGTGGATGCTCAAATTCCCAACTATCCCAATCTTCCCTCAAAATTACTCTGTCTCCTTCACAATGTCACCTTGCATGTATGTGCTTGCTTTTCAATTTCATTTCAAGCTGATCCAGAAACGGATGAAGTATATGCTCAGATGACACTTCAACCTGTGCCTTCTTTTGACAGGGATGCTTTATTAAGATCAGATCTTGCTCTCAAGTCAAGTAAGACACAGCCTGAGTTTTTCTGTAAACAGCTCACCGCAAGTGATACAAGTACTCATGGAGGTTTCTCTGTACCTCGCCGAGCAGCAGAGAAGATTTTCCCTCCTCTTGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTGGCTAGGGATCTGCATGATACTGTTTGGACATTCCGCCATATATACCGTGGGCAACCAAAACGCCACTTGCTTACAACTGGTTGGAGTCTATTTGTCAGTGGAAAGAGGCTCTTTGCAGGAGACTCGGTTTTATTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCTACCAACATATCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAACAATAGTCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATCCCTTTAGCCAAGTACTACAAGGCAGTGTACAGCCACCAAATATCACCTGGCATGCGCTTCAGAATGATGTTTGAAACTGAAGACTCGGGAACAAGAAGGTATATGGGTACAATTACAGGTATCACTGACCTGGATCCTGTGAGATGGAAAAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATTGAACCTGTGACTGCTCCATTTTTCATCTGTCCTCCTCCATTCTTTAGATCCAAGAGGCCAAGACAGCCAGGAATGCCTGATGATGAATCATCCGATTTTGATAACCTTTTCAAACGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGTTCAATGGATGAACATGCAGCAAAATCCTGCACTGGCTAGCTCATTGCAGCCAAATTATGTTCCTTCCTTATCAGGATCTGTTTTGCAAAATCTTCCTGGTGCAGATATTTCCCGTCAGCTGGGATTTTCTGCTCCACAAATTTCTCAGCCAAACAATGTAGCCTTCAATGCTCAGAGGCTACTTCAGAATGCACAACAACTTGATCACCAATCAAAGCTACCATCTGGTTCTAGCACATTGGGAACCATCTTGCAGCCGCAGCAACAGTTGGGGGATATCACTCAACAACCGAGGCAGAATTTGGCAAATCAAACTCTTCCACAGAGTCAAGTTCAGACCCAACTCCTGCATCCTCAGAATCTTGTCCAAACCAACAACATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAACTCCATAGAAGCCTCTCTCAGAACCAACTGCAGCAGCAGATAATTATGGGTCAGAATCAACAACAAAGTATGATCCAGTCCCCTATGCCTGATCATCATCAACAATTACAAATGTCTGATAATCAGATTCAGTTTCAGTTGTTACAGAAGCTTCAACAACAAAAACAAATGCTCTTGGCACAGCAATCTGCACTGCAGCAGCCTACTCAACTTACTCAAATCCAGGATCAGCAGAGGCAGCTTTTAGATAAAACACAAAACTTATCCAGAGCACTACCACCAGGTCAAGTGCTGCAAATTCCTCCTATACTTCCAAATTCACTCCCTGAGACTAATACTGTCACACATCATATGACAAAGGCTAGTAGCCAAAACAATAATCAGTTTTCTCATCTGCCTCAGCAGCCAAAGCTTCAACAACAGCAACCTGGCTTGCTGTCTGAAATGTCTGGCCAGATGGCCCTTCCCCCTACCCCCACAACCAACCAGCTCTCTGCTGCTTGCAGTAGTATACTTACTGGAGCAGCTGGTGCAGGGCAATCTGTAATTACTGATGATGTTCCATCATGTTCCACCTCACCTTCTACAAATAATTGTGCCAATGTACTTCCACCAATGATAAATTCCCGATTCCATAAAAGCACAATATTAGGGGATGACATGGCTCAGTCTGCTGCCACAATCTTAGGTTCAAGTGCCTTAGAAACCATGTCATCAAATACAAACTTGTTAAAAGATTTACAGCCAAAGTCTGAAGTTAAGCCTTCTCTCAACATTTCCAAAAATCAGAATCAAGGGAATTTTGTTCCTCAGACATACTTGAATAGTGGTGCTGCCCAGACAGATTATTTGGATACATCATCTTCTACATCAGTCTGTCTATCTCAGAGTGATGCTCATATGCATCAGAGTAACAACCCACTACCTTACAATCCACAGTCTATGCTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCCAGGAGCAATATTCCATATGGCAATAACATCGATAGCCAAATGGGAATGCCATTGAATCCTGATTCCCTTTTAACCAAAGGCACATTGGGGCTGGAGAAGGATTTGTCTAATAATTTCTCATCAGGAGGAATGCTTGGTAACTATGAACATAATAGGGATTCTCAACAGGAACTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGACTCCACAATAGATGATAGTAGCTTCTTGAATAGGGGTCCATGGGCTCCACCACCTGTGCCGCCACCGCCACCAGTTCCGCCAGCACAGTTTCAGCGGATGAGGACTTATACCAAGGTATATAAACGGGGAGCTGTTGGAAGGTCCATAGACATAACTCGGTATTCAGGTTACGAGGAGCTTAAACAGGATCTGGCTCGTAGGTTTGGTATAGAGGGACAGTTGGAGGATCGGCAAAGGATAGGATGGAAACTTGTCTATGTAGATCATGAGAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTCCGCTGTATTAAGATACTTTCTCCTCAAGAAGTGCAGCAGATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTGCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACTTAA 3381 0.4469 MKTQPQPDGASAAPNPCEGAEKKSINPELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHVCACFSISFQADPETDEVYAQMTLQPVPSFDRDALLRSDLALKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGITDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDESSDFDNLFKRTMPWLGDDMCMKDPQGLPGLSLVQWMNMQQNPALASSLQPNYVPSLSGSVLQNLPGADISRQLGFSAPQISQPNNVAFNAQRLLQNAQQLDHQSKLPSGSSTLGTILQPQQQLGDITQQPRQNLANQTLPQSQVQTQLLHPQNLVQTNNILQQQQPSIQNHQLHRSLSQNQLQQQIIMGQNQQQSMIQSPMPDHHQQLQMSDNQIQFQLLQKLQQQKQMLLAQQSALQQPTQLTQIQDQQRQLLDKTQNLSRALPPGQVLQIPPILPNSLPETNTVTHHMTKASSQNNNQFSHLPQQPKLQQQQPGLLSEMSGQMALPPTPTTNQLSAACSSILTGAAGAGQSVITDDVPSCSTSPSTNNCANVLPPMINSRFHKSTILGDDMAQSAATILGSSALETMSSNTNLLKDLQPKSEVKPSLNISKNQNQGNFVPQTYLNSGAAQTDYLDTSSSTSVCLSQSDAHMHQSNNPLPYNPQSMLFRDNSQDGEVQADARSNIPYGNNIDSQMGMPLNPDSLLTKGTLGLEKDLSNNFSSGGMLGNYEHNRDSQQELSSSMVSQTFGVPDMTFNSIDSTIDDSSFLNRGPWAPPPVPPPPPVPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT. 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00152 1126 Gene3D - 306 377 - -
Seca9g00152 1126 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 618 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca9g00152 1126 Gene3D - 1009 1103 - -
Seca9g00152 1126 Pfam AUX/IAA family 1013 1099 IPR033389 -
Seca9g00152 1126 Pfam Auxin response factor 268 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca9g00152 1126 SMART B3_2 142 244 IPR003340 GO:0003677
Seca9g00152 1126 FunFam Auxin response factor 306 377 - -
Seca9g00152 1126 MobiDBLite consensus disorder prediction 1 21 - -
Seca9g00152 1126 FunFam Auxin response factor 140 244 - -
Seca9g00152 1126 FunFam Auxin response factor 1009 1103 - -
Seca9g00152 1126 CDD B3_DNA 141 233 IPR003340 GO:0003677
Seca9g00152 1126 SUPERFAMILY CAD & PB1 domains 1027 1092 - -
Seca9g00152 1126 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Seca9g00152 1126 SUPERFAMILY DNA-binding pseudobarrel domain 131 271 IPR015300 -
Seca9g00152 1126 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Seca9g00152 1126 Gene3D - 140 243 IPR015300 -
Seca9g00152 1126 ProSiteProfiles PB1 domain profile. 1014 1098 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00152 Seca-Chr9 3715134 3722174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00152 14 485 B3 DNA Binding Superfamily AT1G19220 72.421 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca9g00152 B3 3.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00152 - - ccaj:109803454 1826.6