Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00144 ATGGATAAAAGTGGTGATGATCCAGTTGTTAAGTTAAATGATGATAAAGATCTTGGTTTTGATCATGTTGTTAGCTCTAATGATATTTGTAGTGAGCAACATAATGAAGTGGGTGATAAGAATGATCCTGGAGATGTTCATGTAACAGATGAGCAGGGTAATAGGATTAGTGGCTTGAAAGCTTATGATATACGGTCTCTACAGTTTGGTAGTGAGTTTGAAGCTTATGTATTTTACAGTGAATATGCTAGAGTCCATGGATTTGTTGTGAGGAGAGATGAAATAGGTCGAGATTCCAACGGGAACATGAATATGCGTCAATATGTTTGCAACAGAGAGGGATTGAGGAATAAAAAACACTTTTTAAGGGTAGATAGAAAAAAAGAGCATAAACCAATCACTCGTACCAATTGTCAAGCTAAGCTTCGGATACACTTAGATTACAAGACATCAAAATGGAAAGTGGTGTCCTTTGAGGAGTGTCATAACCATGACCCAACTCATCCCAAATTTGTGCACCTACAGCCCGCTTACCGTGGCATTAATGATGCAGATAAAGCCCAGGTGGATTGCTTGCGTTTGAATGGTGTTAGAACCTGCCATATAATGGGGTATATTCTGGCTCAAAAGGGGGGATATGGTGGTGTTGGTTTTACCAAAAAGGATTTATACAATTATTTTGATCAACAAAAGCGTGAAAAGATCAAAGATGGGGATGCACATACTGCCTTAACTTATCTTCAATCCAAGGCAGACAATGACCCCACATTTTTTGCAAAGTGCTTAATTACATCAGATGGAAAATTAAAGCATCTATTTTGGGCAGATGGAATCAACATATCTGATTATCAATGTTTTGGTGATGTTCTTGCTTTTGATGCCACTTACAAGAAGAACAAATACAACCATCCGCTGGTAAATTTCTCCGGATGTAATCATCATTCTCAGACAGTTATATTTAGTTGTGCTTTAGTCTCTGATGAAACTGTGGAGACATATAAGTGGGTGTTAGAAGCTTTTTTGCAAGGAATGTGCAATAAACACCCGAAAGCGGTTGTGACAGATGGTGATGGGGCTATGAGGGAGGCAATCAAGCAAGTTTTTCCGAATGCTTCACATCGACTCTGCGCATGGCACTTGTATAAGAATGCATGTGATAATGTTAAAAATTATCCATTTATGCATGATTTCAAGATAACAATGTATTCAAATTTCACCCCAGATCAATTTGAAGAGTATTGGAAGAAGATTGTGGTGAAACTTGGGCTCTTGGGAAATAAAACTACATCTCAATGTGAATCCATCAATTCACTAATCAAGGGCTATGTTAAGAGTAAAAATACGATTTTTGAATTCATTCAGAATTTTGATCAAATCTTGAGAGAACACAGAAACAATGAGTTGATTGTTGAATTTAAGTCTCTTTGTTCAGAACCTGTTATGACTACATCTCTTCAGAAGTTTGAGGTTGAGGCTTCAAAAATTTTCACACTTGAAATATTTAGAGAAGTGAGACAGGAGATTGAAGAGGTCGATGCATTAAGTGTTCTGGAGCGTGTAAAAAATGGAGATAAAGTGTCGTACAAGATGACTAAGTACGGTAATCCGGAGAAAGAATTTCATGTTACATATGTTCCGACAAAACCTACTATATTGTGTGACTGTCTTCTTTTTGAGTCTCGAGGCATTCCATGTTCTCATGTTTTTTGTGTTATGAAACATGAACAGGTGGATTGTATTCCTAGCAGTTTAATTTTGAAACGATGGACAAAGGCTGCAAAAAGTGAATTCATGTCCTCAAATAGTTCTGAGGAATTAGATTCTGATGTCATGATGGTTGCCCGTTTTGGGGCATTAGTTGTTGCCTGTAATATGCTTTGTCATATTGCATAA 1893 0.3719 MDKSGDDPVVKLNDDKDLGFDHVVSSNDICSEQHNEVGDKNDPGDVHVTDEQGNRISGLKAYDIRSLQFGSEFEAYVFYSEYARVHGFVVRRDEIGRDSNGNMNMRQYVCNREGLRNKKHFLRVDRKKEHKPITRTNCQAKLRIHLDYKTSKWKVVSFEECHNHDPTHPKFVHLQPAYRGINDADKAQVDCLRLNGVRTCHIMGYILAQKGGYGGVGFTKKDLYNYFDQQKREKIKDGDAHTALTYLQSKADNDPTFFAKCLITSDGKLKHLFWADGINISDYQCFGDVLAFDATYKKNKYNHPLVNFSGCNHHSQTVIFSCALVSDETVETYKWVLEAFLQGMCNKHPKAVVTDGDGAMREAIKQVFPNASHRLCAWHLYKNACDNVKNYPFMHDFKITMYSNFTPDQFEEYWKKIVVKLGLLGNKTTSQCESINSLIKGYVKSKNTIFEFIQNFDQILREHRNNELIVEFKSLCSEPVMTTSLQKFEVEASKIFTLEIFREVRQEIEEVDALSVLERVKNGDKVSYKMTKYGNPEKEFHVTYVPTKPTILCDCLLFESRGIPCSHVFCVMKHEQVDCIPSSLILKRWTKAAKSEFMSSNSSEELDSDVMMVARFGALVVACNMLCHIA. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00144 630 Pfam FAR1 DNA-binding domain 78 165 IPR004330 -
Seca9g00144 630 SMART 26again6 551 578 IPR006564 GO:0008270
Seca9g00144 630 ProSiteProfiles Zinc finger SWIM-type profile. 540 576 IPR007527 GO:0008270
Seca9g00144 630 Pfam MULE transposase domain 289 383 IPR018289 -
Seca9g00144 630 PANTHER OS01G0519700 PROTEIN 66 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00144 Seca-Chr9 3179048 3181018 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g00144 MULE 2e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00144 - - ccaj:109792835 755.747