Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00115 ATGAAACTGAATTGCAATATTGTAATCATGGGTAGATTTGGGCCAAAGGTTTTACAATTGAATTTGACCAATTCACCAAATATAGAACTTAAAGGGAACCTTAATGCATTTCCAAGAAACTTCAAAGACAAGTCTCAACATCCAGATAATATCACATGTCCAGTTGTTAGTAGTCCCAAACAAGGGTCAAATTGTCCTAGTATTCATGAGGAAGGTGAATCTGATTCAGAGAGGGAAAATATGAGTTTATCATCCAAAAGTTCATATTTCCAACCATGGATTTCAAATGCAATGTTTACTAGTATTGAGGATACTATGCTAAGATCAAGTGATGAGTCTTTGGTTTCTACCCCTGAAGCATTGTTTCAGAAATTCTTGAAATTGGATCAAGATCCTATTTTAGGAATGGTGAATTGTAAACTTGATGTGAACTTAAGCAAAAGTGTTAGAGAATCAATTTCACTAGCTAAAACTTCCCCTCCTGACACTCCTCCTCCATTGTGCTCTATTTGTCAGTATAAGGCACCTGTATTTGGGAACCCTCCAAGATGGTTTACATTTGCTGAACTGCAACTTGCCACAGGTGGATTTTCACAAGCAAATTTTTTGGCTGAAGGTGAGTTTGGTTCTGTACACCGTGGTGTTCTACCTGATGGCCAAGTCATTGCTGTCAAACAGTGTAAATTAGCTAGTACTGAAGGAGATGAAGGATTTTGCTCAGAAGTAGATGTCTTAAGCTGTGCACAACATTGTAATGTTGTGATGCTAATTGGATTTTGTGTGGAGGGTAGAAGAAGATTACTAGTTTATGAATACATCTGCAATGGATCTCTATATTCTCATCTTCATGGACAAAAGCAGAATGTACTGAAATGGTCTGCACGTAAAAAAATAGCAATTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGAGGCCTAACAATATTCTCCTCACTCATGACTTTCAAGCATTAGTGGGAGATTTTGGACTTGCCAGGTGGCAGCAGGATGGAGCAATGGGTGTGGAAACCAGGGTGGTTGGGACATTTGGGTATTTGGCTCCAGAATATACTCAAAGTGGTCAAATAACTGAGAAAGCTGATGTGTTCTCCTTTGGAGTAGTATTGCTGGAGCTTGTTACAGGACAAAAAGCTGTGGATATGAACAAGCCCAAAGGCCAACAATGCCTCCATGAATGGGCACGTCCATTGCTAGAGGGAAATGCCATTCATGAACTGGTTGATCCAGGAATAAGCAACTGTGGTGTTGATCAAGAAGTTCATCGCATGTTGCAATGCTCCTCATTGTGCATCCAGCAGGATCCTAATTTAAGGCCACGGATGTCTCAGGTGCTCCGGATACTGGAAAGTGACATTTTGGTGTGA 1422 0.4044 MKLNCNIVIMGRFGPKVLQLNLTNSPNIELKGNLNAFPRNFKDKSQHPDNITCPVVSSPKQGSNCPSIHEEGESDSERENMSLSSKSSYFQPWISNAMFTSIEDTMLRSSDESLVSTPEALFQKFLKLDQDPILGMVNCKLDVNLSKSVRESISLAKTSPPDTPPPLCSICQYKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGEFGSVHRGVLPDGQVIAVKQCKLASTEGDEGFCSEVDVLSCAQHCNVVMLIGFCVEGRRRLLVYEYICNGSLYSHLHGQKQNVLKWSARKKIAIGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFQALVGDFGLARWQQDGAMGVETRVVGTFGYLAPEYTQSGQITEKADVFSFGVVLLELVTGQKAVDMNKPKGQQCLHEWARPLLEGNAIHELVDPGISNCGVDQEVHRMLQCSSLCIQQDPNLRPRMSQVLRILESDILV. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00115 473 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 169 272 - -
Seca9g00115 473 ProSiteProfiles Protein kinase domain profile. 197 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00115 473 Gene3D Transferase(Phosphotransferase) domain 1 273 471 - -
Seca9g00115 473 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 273 473 - -
Seca9g00115 473 ProSitePatterns Tyrosine protein kinases specific active-site signature. 318 330 IPR008266 GO:0004672|GO:0006468
Seca9g00115 473 CDD STKc_IRAK 203 468 - -
Seca9g00115 473 Gene3D Phosphorylase Kinase; domain 1 169 272 - -
Seca9g00115 473 Pfam Protein tyrosine and serine/threonine kinase 201 466 IPR001245 GO:0004672|GO:0006468
Seca9g00115 473 MobiDBLite consensus disorder prediction 55 81 - -
Seca9g00115 473 PANTHER OS01G0750732 PROTEIN 127 471 - -
Seca9g00115 473 MobiDBLite consensus disorder prediction 55 69 - -
Seca9g00115 473 SUPERFAMILY Protein kinase-like (PK-like) 177 467 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00115 Seca-Chr9 2758837 2765239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00115 172 463 Trihelix Transcription Factor Family AT1G68690 50.676 8.75e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca9g00115 PK_Tyr_Ser-Thr 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00115 - - lja:Lj2g3v0911680.2 740.725