Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00113 ATGGTGACGGCGGTCACCACCAGGTTGAAGAGGGAGCAATGCAACCGCACAAAACACGATTCCAATTTCTCCCATTGGAAGATTCTTATTGGGCCTTCTGATTGGGAAGACTATTCGAAAGGAAAAGAAGGATCTGCAAGATACAGGATTCATAACCTCCCAGAGAAATCGAGTCCAGGAGTTTATGAGCTTGGAATAGCTGTGTCATCGAGTAGTGGTTTGGGGCGTCGAATTTACAAGCTTGCCCCTGATCCTCAACGCATAGTTGTAGTTTACCTTGGACAAGCTGACAATGTGAGGACACGACTCCAGCATTATGGCAGAAATGGAGCTCATTTGGGCAGTAGCTGCTGTTCAGATGATTCTTCTCTACAAAAGGGTAGACCATTGTTTCAGGAGATATTTTCACAAGGCTTCCCAATCGTTTATAGATGGGCTCCTATGCAACACAAGGTAGATGCCATAAGAACAGAAACTCAGCTGCTCAATACATTTGATTACGCATGGAACACATGCAGTAATGGTACCCGGCGGCCTGATGATATTCTTCAGATGCTCAACAAAATTGCTTCTGGCACTAGAACATTGTCAGATGTAGCCAAAGTGCTTCTACCTTTCACTCAGAAGCAAGAGGGAATCCGAATTAAATCAAGCAAGCTGCCTCTAACAGATGACAATTCAGATGAAGAGCACAATGGCAGCTACAATTTCCTATCTCGCATATTCAAATTTAACAGATCACGTCCTAGGATAGTTCAGAGTGTCACTGGTGGAGTCATTCAGGAGAATGGTAAAATTTGTGGAGTAACGTTAGGTGATGGTTCTATTTGTAGAAGGCCACCAGCTGAAAAAATAATGAGGTGTCCTGAACACAAAGGAATGAGAACAAATGTGTCCATTGCCAAAGCAAACAGAGCACCCAAGTCAGAGAGCACTGTGGCACTAGAACCTGATGTGTCTTGTCAAACAAAGGGCAATGGCTACAGATACCAAAATTTCAGCCATGAAATAGAAGACCCTCCACAAACAGTGGTTGAGAGTCCTATTGATGAGAGTATTATCAACACTAATATATGTGGAATCATCTTGGATGATGGCTCCCCTTGTAGAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCCTGAACACAAAGGAATGAGAATATATGTGTCCACTGCCAAAGTAATCAGAGAATCCAAGCCAGAGAGCATTGTTATGGTACTAGAACCTAATGTGTCATGTCAAACAAAGGGCAATGGCTACAGGTACCAAAATGACAGCCATGAAGTAGAACACCCTCCTCAAATAGTGGTTGAGAGTATCATCAACACCAACATATGTGGAATCATCTTGGATGATGGCTCTACTTGTAGAAGACTACCAGTTAAAGGAAGAAAAAGGTGCCCTGAACACAAAGGGAGGAGGATCCGTGCATCTATTAATGTATAA 1449 0.43 MVTAVTTRLKREQCNRTKHDSNFSHWKILIGPSDWEDYSKGKEGSARYRIHNLPEKSSPGVYELGIAVSSSSGLGRRIYKLAPDPQRIVVVYLGQADNVRTRLQHYGRNGAHLGSSCCSDDSSLQKGRPLFQEIFSQGFPIVYRWAPMQHKVDAIRTETQLLNTFDYAWNTCSNGTRRPDDILQMLNKIASGTRTLSDVAKVLLPFTQKQEGIRIKSSKLPLTDDNSDEEHNGSYNFLSRIFKFNRSRPRIVQSVTGGVIQENGKICGVTLGDGSICRRPPAEKIMRCPEHKGMRTNVSIAKANRAPKSESTVALEPDVSCQTKGNGYRYQNFSHEIEDPPQTVVESPIDESIINTNICGIILDDGSPCRRQPVKGRKRCPEHKGMRIYVSTAKVIRESKPESIVMVLEPNVSCQTKGNGYRYQNDSHEVEHPPQIVVESIINTNICGIILDDGSTCRRLPVKGRKRCPEHKGRRIRASINV. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00113 482 Pfam GIY-YIG domain-containing protein 23 183 - -
Seca9g00113 482 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 337 410 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00113 Seca-Chr9 2714203 2716982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00113 358 480 HRT Transcription Factor Family AT5G56780 36.585 7.39e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Seca9g00113 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00113 - - lang:109350609 627.861