Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00105 ATGGCTTGCAGTACAGGATTTAAGCGAAAAAACAATTCTGAGGAGAAGAAATTGCCCATCAGAAAACGCCAACCAAAACTCATCACTTTCTACATGAACACTGTATTGCTAGTGGATGGTTTGAATTCATCCAGACTTACTGAGCAGGCAATGTTGGCATCACTAGGTTTTCATACACTGGCTTTGAGCAATGCTCAAGATGCAATAGAAATTTTGGCGACTGGAGCCCGCTTTGACTTCATAGTCATTGATTTTCATTTGTCCATAATCAATGGACTTCAGATGGTGAGGCAGATCCGTGCGATGGGCATACCGAGCAAGATCCTGGGTCTGTGTACAAATTACAATACAGATACTAGGCGCATGTTTTATGAAGCAGGAGCAGATGTCTGCATTGGAAAACCTCTGACCCTGGAAAGCTTGAGGGAAATCATTAGATACCTTGGCAACGTGTACTGA 459 0.4292 MACSTGFKRKNNSEEKKLPIRKRQPKLITFYMNTVLLVDGLNSSRLTEQAMLASLGFHTLALSNAQDAIEILATGARFDFIVIDFHLSIINGLQMVRQIRAMGIPSKILGLCTNYNTDTRRMFYEAGADVCIGKPLTLESLREIIRYLGNVY. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00105 152 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 150 - -
Seca9g00105 152 SMART REC_2 33 145 IPR001789 GO:0000160
Seca9g00105 152 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Seca9g00105 152 Gene3D - 32 150 - -
Seca9g00105 152 CDD REC_hyHK_CKI1_RcsC-like 35 145 - -
Seca9g00105 152 SUPERFAMILY CheY-like 32 148 IPR011006 -
Seca9g00105 152 Pfam Response regulator receiver domain 35 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00105 Seca-Chr9 2579146 2579810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00105 35 148 Response Regulator Gene Family AT3G04280 27.586 4.24e-10 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca9g00105 Response_reg 7.5e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00105 - K20974 tpra:123904015 122.094