Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00101 ATGAGAAACACGGTATGTAATAGGCAAGAAGAGAGGTCTGAGAAGAACATGCAAAGGAAGGATAGGTGTCGTGAACCAAGGGCCATTACCCGCACACGTTACCATGCAAGGCTCCATGTTCGTTTAGGTTACTTGAGTGGAAAATGGACAGTTACTCATTTTGAGCCCAATCATAATCACGAGTTGACCCCATCAACATATGTCCATTTGATTTCTTCAAATAGAGGTCTTTCTGAGGGTGATAAGGCTCAAGTGAATAGTTTGCACATGTATGGTGTTCGTACTTGTCATATTTTGGGTTTCATTTTAGGTCAGAAAGGGGGGTATGCAGATCTTGGCTTTTACAAAAAGGATTTGTACAATCATATAGATAAGGACAAAAGGGCTAAAATTAAGGATGGTGATGCTTTTGCTGTCTTATGTTACCTTCAGGAAAAAGCTGATAATGACCCGATGGTGTTCACAAAATTTACGATTACAGATGATGGAAATCTTAAGAATCTGTTTTGGACTGATGCTAGTAGTAGGATTGGTTACCACTGTTTCGGGGATGTAGTGGCTTTTGACACAGCATACAAGAAGAATAAGTATAATAAGCCATTGGTTATTTTTTGTGGTTATAATCATCATGGTGAAACAACAATATTTGCTTGTGCCTTGATTGCTGATGAAAAGAGTGATACTAACAAGTGGGTTTTAGATACTTTTTCAGAAGCTATGTTTGGAAAACATCCTAAGGCAATTGTAACTGATGGTGATGGTGCAATGAGGGAAGCCATTAGGAGTGTTTTCCCAAATTCTGTTCATAGGTTGTGCTCTTGGCATCTTCATCAGAATGCATGCGAGAATGTGAAGAGTCCTAAGTTTCTAGAGGAATTTAAGACATTACTTTACATTAACATTGGACCTGATGGGTTTGAAATGAAGTGGAGCAGTTTAGTTGAAAAGTATGGTCTTTCTAATAATAGGTGGGTTAAAAAAATTTATGAAATGAAGAGGTTGTGGGCTACTGCTTATATGCGTGATTGTTTTTTAGGTGGTATAAAGACAACTTCTATTTGCGAAGGTATAAACTCATTTATAAAGAGATATGTGCAAAATAAGAATAGTCTTGTTGAATTTTTACACAATTTTGAAAGGGCGGTTAAAGAATATAGACACAATGAGTTGATGTCTGATTTCAAGACTAAGTTTTCTGATCCTTTTCTGAGCACATCTTTGTATAAGTATGAATTTGCCGCATCCAAAGTTTATACAAGGAACAAGTTCTGGGACGTTAGGAAAGAGATTGAAAATGTTGCCGCTCTAAATGTCATTGATAGATCAGAAGTTGATAACAAAGTGAGGGTGAAGATAAACAAGTTTGGAAGTGCTTGTTCTGAGTATGTGGTGATATATGACAAAGATAAAGGGGTTTTCGCTTGTGACTGTCATCTATTTGAGACTTGTGGCATTATGTGCTCTCACATCTTTTGTACAATGAAAAATGAGAGTATAGAGGTAATACCTGAATTTCTGATATGCAAGAGATGGACGAAGGCAGCCAAGGATGAATTTATATCTGAATTAAGTGTTGCAGACAATGATTCTAGTAAATTGGATCTGTTGAAGACCAGTGTTGTTGCAGATGCATGTAATAGGCTTTTTAGAGCTACTTGTAAGTATCTGGGAAATTATCGTTTAAATATTGATTCAATTAACAAGTTGACTGCTGAGATTGAAAAAAGAGGGAGTTCAGATAAGAACCGCAACAAAGGGTCCAATATGATTGGTGACCCCATAGTGGTTAAAACTAAAGGTGCTCCACGAAAAGGGAAAAACAGGATGAAAAGCAGACATTGCTCGCATTGTAAGAGGACTGGTCATTATGTTTCTAAGTGTCCTGCTTTGAGAGATCGTGATAAGCTGGGGGAGGTTCAAGTTGACAGCATGGCACAAGCTACAGAAGCTGAAAGAAATGATGATGATGTGGGGTGCACTGATTGTTCTTTAGGAACACAACGAAATGGATTACTTGCAGATGGCAATGCAAATTATAGAACATTTGAGCCTCCTGCAATAACTAGTGGATGTGTAAAGAGGAAAAGAAATGCAAAATCAGAGGTTAAGATGACTCAGGAATCTGTTAATGATACTCATACGGCCAATAGTATGGATGGCAGTGTAAAACCTGTTGGTTTAAGGACTACAACTAATGTTTTATTTTCAAATATCAATATGAAAAATGAGAGTATAATTCAATCACATGGTCTTTCTACAAATGTTGTTCAATATGGATTCCCTCACTGGAGATATGACACCATTGATGGTGTCATGCCAAGCTTCTCTTCGCAGTATCCCATATATCAGCAAATGAATTTTATGCCACCATTCCCTCAAAATCATTATGTTCCATCCTTCCATGGAAATGGCTCTAATGCCATTGGTGGGAACATTTATGTGAATAGAAATGCACATTTATCAACGAGGAAATGCAAACAGTAA 2484 0.3732 MRNTVCNRQEERSEKNMQRKDRCREPRAITRTRYHARLHVRLGYLSGKWTVTHFEPNHNHELTPSTYVHLISSNRGLSEGDKAQVNSLHMYGVRTCHILGFILGQKGGYADLGFYKKDLYNHIDKDKRAKIKDGDAFAVLCYLQEKADNDPMVFTKFTITDDGNLKNLFWTDASSRIGYHCFGDVVAFDTAYKKNKYNKPLVIFCGYNHHGETTIFACALIADEKSDTNKWVLDTFSEAMFGKHPKAIVTDGDGAMREAIRSVFPNSVHRLCSWHLHQNACENVKSPKFLEEFKTLLYINIGPDGFEMKWSSLVEKYGLSNNRWVKKIYEMKRLWATAYMRDCFLGGIKTTSICEGINSFIKRYVQNKNSLVEFLHNFERAVKEYRHNELMSDFKTKFSDPFLSTSLYKYEFAASKVYTRNKFWDVRKEIENVAALNVIDRSEVDNKVRVKINKFGSACSEYVVIYDKDKGVFACDCHLFETCGIMCSHIFCTMKNESIEVIPEFLICKRWTKAAKDEFISELSVADNDSSKLDLLKTSVVADACNRLFRATCKYLGNYRLNIDSINKLTAEIEKRGSSDKNRNKGSNMIGDPIVVKTKGAPRKGKNRMKSRHCSHCKRTGHYVSKCPALRDRDKLGEVQVDSMAQATEAERNDDDVGCTDCSLGTQRNGLLADGNANYRTFEPPAITSGCVKRKRNAKSEVKMTQESVNDTHTANSMDGSVKPVGLRTTTNVLFSNINMKNESIIQSHGLSTNVVQYGFPHWRYDTIDGVMPSFSSQYPIYQQMNFMPPFPQNHYVPSFHGNGSNAIGGNIYVNRNAHLSTRKCKQ. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00101 827 MobiDBLite consensus disorder prediction 703 723 - -
Seca9g00101 827 MobiDBLite consensus disorder prediction 1 22 - -
Seca9g00101 827 SUPERFAMILY Retrovirus zinc finger-like domains 600 632 IPR036875 GO:0003676|GO:0008270
Seca9g00101 827 MobiDBLite consensus disorder prediction 701 723 - -
Seca9g00101 827 PANTHER OS01G0519700 PROTEIN 2 526 - -
Seca9g00101 827 Pfam MULE transposase domain 185 279 IPR018289 -
Seca9g00101 827 ProSiteProfiles Zinc finger SWIM-type profile. 462 498 IPR007527 GO:0008270
Seca9g00101 827 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00101 Seca-Chr9 2415938 2421085 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g00101 MULE 2.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00101 - - tpra:123910662 734.947