Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00096 ATGGTGGAGAAGGGCAAAGGTAGGAAGGAGGAGGTGGTTACCAGAGAGTACACCATTAATCTCCACAAGCGCCTCCATAGCTGCACATTTAAGAAGAAAGCCCCAAAAGCAATTAAGGAGATAAGGAAATTTGCCCAGAAAGCAATGGGAACCAATGATGTGAGGGTGGATGTGAAGCTGAACAAGTATGTCTGGAGCCAGGGAATCCGAAGTGTTCCAAGGAGGATTAGGGTACGCATTGCTCGCAAGAGGAATGATGATGAAGATGCCAAGGAAGAGCTATACTCTCTTGTTACAGTTGTTGAAATCCCTAAGGAAGAGCTCAAGGGGTTGGGCACTAAGGTCATTGATGATGAGGACTGA 363 0.4656 MVEKGKGRKEEVVTREYTINLHKRLHSCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00096 120 SUPERFAMILY Ribosomal protein L31e 11 92 IPR023621 -
Seca9g00096 120 ProSitePatterns Ribosomal protein L31e signature. 54 68 IPR020052 GO:0003735|GO:0005840|GO:0006412
Seca9g00096 120 PANTHER 60S RIBOSOMAL PROTEIN L31 2 119 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca9g00096 120 SMART Ribosomal_L31e_2 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca9g00096 120 Pfam Ribosomal protein L31e 11 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca9g00096 120 Gene3D - 9 120 IPR023621 -
Seca9g00096 120 CDD Ribosomal_L31e 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Seca9g00096 120 FunFam 60S ribosomal protein L31 6 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00096 Seca-Chr9 2377863 2379356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00096 2 120 Cytoplasmic Ribosomal Protein Gene Family AT2G19740 83.193 4.81e-70 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00096 K02910 - gmx:100810835 219.164