Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00084 ATGGGAAGGGCTCCATGTTGTGACAAATCCAATGTGAAAAGAGGACCATGGTCTCCTGAAGAAGATGCCACCCTCAAAAACTACCTTGAGAAGCATGGCACAGGTGGTAATTGGATAGCTCTGCCCCAAAAAGCAGGCCTTAAGCGTTGTGGGAAGAGCTGTCGTCTGAGATGGCTGAACTATCTTAGGCCTCATATCAAGCTTGGAGGTTTCACTGAAGAGGAAGACAAAATCATCTGCACCCTTTATGGCACCATAGGAAGCAGGCAAGTCTATTCCTTTACTATATGTGCACACATGTGGTCCCTTATAGCAGCTCAACTGCCTGGGAGAACAGACAATGATGTGAAAAACCACTGGAACACCAAGCTAAAGAAAAAGTTTTTGGCTGGATCAAACTCCAGTATTGCCACAAGTAAAAATGACTGTATCAGCAACAAGACTAGTTGTTCTGATCATCATTTCTCAAATTTTACTCTTCCACCTCAATTTGAACCATTTGTCATTGATCAAGGAAACAACACAGCTTGTTTTGACCCCCACAATGTTTTTGATTTGGGGCAAACACCAATTCCAGTTCCTTTACCAATGCCTCTGGAATCAGAAGCTTTTTATAGTGGGAGCTGCAGCCAGATTAGTAGCTGTAGTAGTACACCACCCACTAAGGAAGTTTCAATTCTTTCCAATGCAGAACAGAACAATCATAGCCAATGGTTTGGATATGACCATGAAGGTGAAGGTGATGCAATTTTGCTTGAATTTGTGCTTGATGATCTATTGAGTCATGGATTTGCATCTCTAGACAAAAGCAACCAAGTTGCTCCAACTCCATCATCTGGGTAA 843 0.4259 MGRAPCCDKSNVKRGPWSPEEDATLKNYLEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTLYGTIGSRQVYSFTICAHMWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAGSNSSIATSKNDCISNKTSCSDHHFSNFTLPPQFEPFVIDQGNNTACFDPHNVFDLGQTPIPVPLPMPLESEAFYSGSCSQISSCSSTPPTKEVSILSNAEQNNHSQWFGYDHEGEGDAILLEFVLDDLLSHGFASLDKSNQVAPTPSSG. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00084 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Seca9g00084 280 PANTHER OS09G0431300 PROTEIN 1 171 - -
Seca9g00084 280 Pfam Myb-like DNA-binding domain 71 122 IPR001005 -
Seca9g00084 280 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca9g00084 280 FunFam Transcription factor RAX3 7 68 - -
Seca9g00084 280 SMART sant 67 126 IPR001005 -
Seca9g00084 280 SMART sant 13 64 IPR001005 -
Seca9g00084 280 CDD SANT 16 62 IPR001005 -
Seca9g00084 280 CDD SANT 71 124 IPR001005 -
Seca9g00084 280 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca9g00084 280 Gene3D - 6 68 - -
Seca9g00084 280 Gene3D - 70 152 - -
Seca9g00084 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 128 IPR017930 -
Seca9g00084 280 ProSiteProfiles Myb-like domain profile. 63 124 IPR001005 -
Seca9g00084 280 SUPERFAMILY Homeodomain-like 11 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00084 Seca-Chr9 2234617 2235985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00084 1 148 MYB Transcription Factor Family AT5G57620 67.568 5.17e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g00084 Myb_DNA-binding 5.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00084 K09422 - gmx:778160 351.288