Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00083 ATGCTCGGAGAGCACCATCGCGCTAATCCAACGATCCACGTGCCTCCATGGCCAGTCCATGATGATCCAACGGTGGAGATGTATTCCCCGTGCTATGCAAACGACGGAGGCAATGCCGGCGCCGGAGATTACTCTCCGAACTACCTGCAAGAAGCGCTGGCGGCGCTGCAGCATTACCTGCCGTCGAACGAGACGGACGGTGGCGACTCGGACTCGGGTCGCGATTTGGATGCTCCGGTAGACGCTTATTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGCGGAGGTGCGCACGTGGTAGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCGAGGAAATTCCACTACTCCGGCACGGCTTGCCCTGATTTCCGCAAGGGGAATTGCAAGAAAGGTGACTCATGCGAGTTCGCGCATGGCGTTTTCGAGTGCTGGCTTCATCCTGCTCGCTACAGGACTCAGCCCTGTAAGGATGGTACCAGTTGCCGGCGGCGAGTGTGCTTCTTTGCTCACACGCCGGAGCAGCTACGCCTTGTGCCGCAGCAGAGCCCTCGTAGCGCTAACTCGGCGGATTCTTATGATGGCTCTCCTCTGAGACAGGTTTCCATGCCATTCATGTCTTCTCCGGTGTCTATTTCCCCGCCGGTGAGTCCTCCGGCGGATTCTCCGCCCATGTCGCCGATGACGCAGTCGCTGAGCCGGTCTCTGGGTTCAAGCTCCATCAATGAGATGGTGGCTTCTCTGCGGAATTTGCAGTTAGGGAAAGTGAAATCGTTTCCCTCTAACAGAAACATTTCAATGGGGTCTCCTGGATTCGGGTCTCCAAGAGGATCCGTGCTCCGACCCGGGTTTTGTAGCCTTCCCACTACGCCAACTCAGGCACCGACTCGTTCTGGTGTTAGTCACTTTGATCTTTGGGAGCAGAGCTGTGAAGAGGAACCAGTGATGGAGAGGGTGGAGTCTGGAAGGGACATAAGGGCGAAGATGTTTGAGAAATTGAGCAAAGAGAACTCTCTGGATAGGTCGGGTTCGGGTCCTTCGGGTGGAGCCCCGGATGTTGGATGGGTTTCTGAGCTGGTGATGTGA 1122 0.5704 MLGEHHRANPTIHVPPWPVHDDPTVEMYSPCYANDGGNAGAGDYSPNYLQEALAALQHYLPSNETDGGDSDSGRDLDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSANSADSYDGSPLRQVSMPFMSSPVSISPPVSPPADSPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSFPSNRNISMGSPGFGSPRGSVLRPGFCSLPTTPTQAPTRSGVSHFDLWEQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGSGPSGGAPDVGWVSELVM. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00083 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872
Seca9g00083 373 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Seca9g00083 373 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Seca9g00083 373 Gene3D - 128 190 - -
Seca9g00083 373 PANTHER UNKEMPT FAMILY MEMBER 51 372 IPR045234 -
Seca9g00083 373 MobiDBLite consensus disorder prediction 190 222 - -
Seca9g00083 373 MobiDBLite consensus disorder prediction 347 373 - -
Seca9g00083 373 ProSiteProfiles Zinc finger C3H1-type profile. 128 154 IPR000571 GO:0046872
Seca9g00083 373 MobiDBLite consensus disorder prediction 190 246 - -
Seca9g00083 373 MobiDBLite consensus disorder prediction 223 237 - -
Seca9g00083 373 FunFam Zinc finger CCCH domain-containing protein 66 85 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00083 Seca-Chr9 2225557 2226678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00083 77 277 C2H2 Transcription Factor Family AT5G12850 51.643 9.55e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca9g00083 zf-CCCH 2.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00083 - - aprc:113867365 631.713