Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00058 ATGAATAAGATGAGCAACTTGAGTTCTGTTAGCAGCTCTGATCTGATAGATGCAAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGCAAGCCGGACTGGCTAGGTCTGCCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTAATAGAACATCTTGAAGCTAAAGTGGAGGCAAAGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCTACTATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGCTTAAGCAGGCACTTCTTCCACAGGCCATCAAAGGCTTATACAACTGGGACAAGAAAGAGAAGAAAGATTCAAAATGAATGTGACTTGCAAGGAGGAGAAACCAGATGGCACAAAACAGGTAAGACCAGGCCAGTCATGGTGAATGGGAAACAAAAAGGCTGCAAGAAAATTCTAGTCCTCTACACCAACTTTGGGAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCATCAGTACCATCTTGGTCAGCATGAAGAGGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGGCAATGCAATTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGATCAGCCTAATAACAGTAGAAGAGACAGTGGAAGTGGAAGCTGTTCTTCAAAGGAAATAGTTCCTCATAGAGATGAAATGTCTGCTGTTGTTGGAGTCCCTCCAATAACAAGCTTCACTCATGCTTTGGATATTCAACACCTAAAATCAGACCATTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCCACAGCAAGAGAAGTGCAAGCATCTGGATCATGTGAAGAAGTACATGAACGGCAGAGAACACAACATGTACCTCATCATCATCATCAACAGCAACATCACCATCAGATTGCAAACTCAGCTTTTCATATAAGTAGGCCTTCACATCCCATCTCTGCCATTATCTCTCCGCCTCCTCTCCACCAAACATCCATCATCCTCGATGACAACTCTTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTCCAGGTAATTAATAATCCCCATCAGCAACAACATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATAATGGGTTGCACTTCAACTGATATCAAAGAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCATCTTATTGGCCAGACCCTGACAATCCGGATCATCATGGATAG 1344 0.4345 MNKMSNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGDQPNNSRRDSGSGSCSSKEIVPHRDEMSAVVGVPPITSFTHALDIQHLKSDHFSFIPFRKSFDEVGMGEASTAREVQASGSCEEVHERQRTQHVPHHHHQQQHHHQIANSAFHISRPSHPISAIISPPPLHQTSIILDDNSYHVSRIMLQNENFQVINNPHQQQHHKLGGRSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00058 447 FunFam NAC domain-containing protein 73 56 212 - -
Seca9g00058 447 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Seca9g00058 447 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Seca9g00058 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 9 331 IPR044799 GO:0003700
Seca9g00058 447 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Seca9g00058 447 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Seca9g00058 447 MobiDBLite consensus disorder prediction 215 245 - -
Seca9g00058 447 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00058 Seca-Chr9 1674823 1678919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00058 11 444 NAC Transcription Factor Family AT5G56620 53.961 1.73e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g00058 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00058 - - gmx:100795246 789.26