Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00049 ATGAGTCTCGAGCCACCCCTCAATCCCCCTTCAACCGTCGAGATCATCGACGTCGAATCCTTTCGCTTCACCCGTAACAGAGACACCCACGTCATCAACCTTTCCGATGCCGAAGACGACGACGACGACGTTAGAGTCCTCAATTTCATACCCCTAAACACCACTTTCGGTAACAGAAGAAGAAGAAGAAGAAGAAGCAGAAACGACACCAACGACCACTGCGTTGAGAAAGGAGAGTCTTCGAACAGCACGCCCTTCTTCTGCGAGATTTGCGCGGACACCAAAACGGCGAAAGACGCCTTCAGCATCAGCGGCTGCTCCCACGCGTATTGCTCTGAGTGCGTCGCCATGTACGTGGGTTCCAAGCTTCAAGAAAACGTGATCAACATTCGGTGCCCCGTTTCGGGATGCAGTGGTTTGTTAGAGGCGGAGTATTGCCGTGCGATTCTTCCGCCGGAGGTGTTCGATCGGTGGGGGAAGGCGTCGTGTGAGGCCGTGATTTCTGCTTCGGAGAAATTCTATTGTCCCTTCGCGGATTGCTCTGCGCTGTTGATTGATGATGGAACAGAGACAGTTAGGGAATCAGAGTGCCCTAATTGTGGGAGGTTGTTCTGCGCGCAGTGTAAGGTTCCTTGGCATATGGGGATAGAGTGCGATGAGTTTCAGAAGCTGAATGAGGACGAGAGGGGGAAGGAAGATGTCATGTTGATGCATCTTGCTAAGGAGATGAAGTGGATGAGGTGCCCCAATTGCAGGTTTTACGTTGCCAAATCTGACGGTTGCATGTACATGAGATGCAGGGTGTGGATATGCCTTCTGTTACAACTGTGGAACTGCTAA 840 0.5167 MSLEPPLNPPSTVEIIDVESFRFTRNRDTHVINLSDAEDDDDDVRVLNFIPLNTTFGNRRRRRRRSRNDTNDHCVEKGESSNSTPFFCEICADTKTAKDAFSISGCSHAYCSECVAMYVGSKLQENVINIRCPVSGCSGLLEAEYCRAILPPEVFDRWGKASCEAVISASEKFYCPFADCSALLIDDGTETVRESECPNCGRLFCAQCKVPWHMGIECDEFQKLNEDERGKEDVMLMHLAKEMKWMRCPNCRFYVAKSDGCMYMRCRVWICLLLQLWNC. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00049 279 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 272 IPR031127 GO:0004842|GO:0016567
Seca9g00049 279 FunFam RBR-type E3 ubiquitin transferase 83 169 - -
Seca9g00049 279 SUPERFAMILY RING/U-box 83 167 - -
Seca9g00049 279 Pfam Zinc finger, C3HC4 type (RING finger) 88 133 IPR018957 GO:0046872
Seca9g00049 279 SUPERFAMILY RING/U-box 164 223 - -
Seca9g00049 279 ProSiteProfiles TRIAD supradomain profile. 84 279 IPR044066 -
Seca9g00049 279 Gene3D - 220 279 - -
Seca9g00049 279 SMART ibrneu5 156 218 IPR002867 GO:0008270
Seca9g00049 279 ProSiteProfiles Zinc finger RING-type profile. 88 134 IPR001841 -
Seca9g00049 279 SUPERFAMILY RING/U-box 229 271 - -
Seca9g00049 279 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Seca9g00049 279 Pfam IBR domain, a half RING-finger domain 161 218 IPR002867 GO:0008270
Seca9g00049 279 Gene3D - 173 219 - -
Seca9g00049 279 CDD BRcat_RBR_unk 169 221 - -
Seca9g00049 279 MobiDBLite consensus disorder prediction 60 79 - -
Seca9g00049 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 169 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00049 Seca-Chr9 1494852 1497406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00049 88 267 C3H Transcription Factor Family AT2G19610 30.688 3.07e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00049 K11975 - gmx:100803898 333.569