Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00048 ATGGCTTCTGATTCCGTTCCTTCTCTCAACGTGGTGGGATATACCGCTTCTCCACCAAAACACCCTCCATCTCTCTTACTCAACATTCTCATAAGCATAACGGACTTCGCCATCGTCGTCACCATCTTTCTAGTTCTCTATTCCATCCTATGTTACCGTTGTCGTTTCTCTTCGTCATCTGTCGCAGTCTTCTATCCTAACCATCGAATATCATCGAAGATTACTTTGTCATCCGTTGTCGACTCCGTCCCATTGTTTTCCTTCTTTTTCATCAACTGTCACTCCTCCCTCGCCGGAGGCGACTGCGTCGTTTGCTTGTCGAAGTTCGAGCTGCGCGACCTCCTCTGCCTCCTCCCTTTATGTTGCCACACCTTCCACGCTAAATGCATGGACACCAGGCTCTGA 405 0.4889 MASDSVPSLNVVGYTASPPKHPPSLLLNILISITDFAIVVTIFLVLYSILCYRCRFSSSSVAVFYPNHRISSKITLSSVVDSVPLFSFFFINCHSSLAGGDCVVCLSKFELRDLLCLLPLCCHTFHAKCMDTRL. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00048 134 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 134 - -
Seca9g00048 134 Pfam RING-like zinc finger 101 129 IPR001841 -
Seca9g00048 134 SUPERFAMILY RING/U-box 85 132 - -
Seca9g00048 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00048 Seca-Chr9 1490451 1490855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00048 78 134 C3H Transcription Factor Family AT5G05810 45.614 7.57e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00048 K10663 - gmx:100804962 102.834