Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00042 ATGTCAAACTTGTGTTACATTTTCTGCATGTTAGCAATTCTTCTTCTTCTGCAAAATCCCACTAGAATACACTGCCATACTAAGGGAATTAGACCAAGACGTTCTGCTGGGAATGGTTTATTGACCAATATGTCAAGAGTAGAGTATTCAGAACAGCAATTCATGAAATGGGTCAATTTTGTTGGTAGCCTTAAACACACAGTTTTTAAGACTGCAAAAAATAAGCTCTTTGCTTCTTACACTTTGCACGTTGATAAGAATCCTGCTCTTGGTGATTTCACATCAATTCAAGAAGCCATTGATTCCCTTCCATCCATTAATCTTGTGAGAGTGATCATCAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAATATTCCTGCTTTGAAATCCTTCATAACCATAGAAGGTGCTGGTGCAGATAAAACCATTGTTCAATGGAATGACACTGCTCAAACACCTGGGCCAAGTGGGAAACCATTGGGAACCATTGGTTCTGCAACTTTTGCAGTGAATTCACTTTATTTCATTGCCAAGAACATAACATTCCAAAACACTACTCCTGTTCCTGCACCAGGAGCAATTGGAAAACAAGCAGTGGCATTCAGGATTTCAGCAGACACAGCAGCATTCTTGGGCTGCAAATTCTTAGGAGCACAGGACACACTGTATGATCATATGGGCAGGCATTACTATAAGGATTGTTATATTGAAGGTTCTGTTGATTTCATATTTGGCAATGCTCTCTCCCTTTATGAGGGATGTCACGTGCATGCCATAGCACAGAATACAGGGGCCTTAACAGCTCAAGGAAGAAGCAGTATGTTGGAAGACACGGGGTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCTTTTTCTCGCGTGGTCTTCGCCTATACCTATATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTAGCATGGTCAAGAGAACTCACTGATGAGGAAGCTAGACCTTTTCTTTCACTTAGCTTTATTGATGGGACTGAATGGATTAAAATTTAG 1143 0.4226 MSNLCYIFCMLAILLLLQNPTRIHCHTKGIRPRRSAGNGLLTNMSRVEYSEQQFMKWVNFVGSLKHTVFKTAKNKLFASYTLHVDKNPALGDFTSIQEAIDSLPSINLVRVIIKVHAGVYTEKVNIPALKSFITIEGAGADKTIVQWNDTAQTPGPSGKPLGTIGSATFAVNSLYFIAKNITFQNTTPVPAPGAIGKQAVAFRISADTAAFLGCKFLGAQDTLYDHMGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIAQNTGALTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVAWSRELTDEEARPFLSLSFIDGTEWIKI. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00042 380 SUPERFAMILY Pectin lyase-like 78 379 IPR011050 -
Seca9g00042 380 Gene3D - 77 380 IPR012334 -
Seca9g00042 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 379 - -
Seca9g00042 380 FunFam Pectinesterase 78 380 - -
Seca9g00042 380 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Seca9g00042 380 Pfam Pectinesterase 91 374 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00042 Seca-Chr9 1376089 1379477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00042 93 378 Carbohydrate Esterase AT5G47500 50.871 1.41e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00042 K01051 - gmx:100793314 700.664