Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00038 ATGGGGAGAGCCACAAGGTGGCTGAAGGGCTTGTTTGGGATAAAAGAGAACAGAGAACACAAACAAAACTCAAACTTTGGAGACCCCAACAGCATGAAACATGTTTCTTCTTCTGCAGCTCATTCTGAGAGTAATTCCAAAATCTTGTGTCTCAATCCAGCCACTATACCACCCAACATTTCTCCAGCAGAAGCTGCTTGGTTACAATCTTTCTACACAGACAAAGAAAAGGAGCAGAACAAGCATGCCATTGCAGTTGCTGCAGCCACAGCTGCAGCAGCTGATGCTGCTGTGGCTGCTGCACAGGCTGCAGTGGCAGTGGTTAGGCTAACCAGCCATGGAAGAGGCACCATGTTTGGTAGTGGACATGAGATGTGGGCTGCTATCAAGATTCAAACAGTGTTTAGAGGATACCTGGCAAGGAAGGCACTGAGAGCCTTAAAAGCATTGGTGAAGTTACAAGCACTTGTAAGAGGGTATTTGGTGAGGAAGCAAGCAACAGCAACACTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCTACAGTTAGGTCTCAGAAATCTGGCAGGCTCATGAGCACAAAGAATGAAGCAAATAAATTTCAAAACCAAGCAAGAAGATCCATGGAGAGATTTGATGACACTAGGAGTGAGTACACAGCTCCAATCCACAGTAGAAGGTTGTCATCTTCTTTTGATGCCACAATTAACAACAACAGTGTTAATGATGGAAGCCCCAAAATAGTTGAAATGGACACTGGGAGGCCTAAGTCAAGGTCTCGCAGGAGCAACACATCAATATCAGATTTTGGTGATGACCCTTCATTTCAGGCACTTTCTTCTTCCTTCCCAATCCCTTGTAAAACACCTATTCGTTTGTCCATACCAGACCATAGGAATTTCCAGGACTCTGATTGGGGGTTAACAGGGGAAGAGTGTAGATTCTTTACAGCACAAAGCACTCCAAGGTTTACACATTCTTGTAGTTGTGGTTCAGTTGCACCTGTGACACCAAAGAGTGTATGCAATGACAACTTATTCCTTAGGCAATATGGGAATTTTCCAAATTACATGGCTAGCACTCAGTCTTTTAAGGCCAAATTGAGGTCACATAGTGCTCCAAAGCAACGGCCAGAACCAGGTCCAAAGAGGAGGCTTTCACTCAATGAAATGATGGAGTCTAGGAATAGTTTAAGTGGGGTTAGAATGCAGAGGTCTTGTTCACAGGTTCAAGAAGTCATTAATTTTAAGAATGCTGTGATGAGTAAGCTTCAGAAGTCCACAGAATCTGCCACTGCAAAGGAGACAGACAGAAGTTACTTCCACCAGAGGAGGTGGTGA 1341 0.4437 MGRATRWLKGLFGIKENREHKQNSNFGDPNSMKHVSSSAAHSESNSKILCLNPATIPPNISPAEAAWLQSFYTDKEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGSGHEMWAAIKIQTVFRGYLARKALRALKALVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQKSGRLMSTKNEANKFQNQARRSMERFDDTRSEYTAPIHSRRLSSSFDATINNNSVNDGSPKIVEMDTGRPKSRSRRSNTSISDFGDDPSFQALSSSFPIPCKTPIRLSIPDHRNFQDSDWGLTGEECRFFTAQSTPRFTHSCSCGSVAPVTPKSVCNDNLFLRQYGNFPNYMASTQSFKAKLRSHSAPKQRPEPGPKRRLSLNEMMESRNSLSGVRMQRSCSQVQEVINFKNAVMSKLQKSTESATAKETDRSYFHQRRW. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00038 446 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Seca9g00038 446 Pfam IQ calmodulin-binding motif 148 165 IPR000048 GO:0005515
Seca9g00038 446 Pfam IQ calmodulin-binding motif 126 145 IPR000048 GO:0005515
Seca9g00038 446 PANTHER IQ-DOMAIN 5-RELATED 1 390 - -
Seca9g00038 446 Coils Coil 191 211 - -
Seca9g00038 446 MobiDBLite consensus disorder prediction 237 273 - -
Seca9g00038 446 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Seca9g00038 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 166 IPR027417 -
Seca9g00038 446 MobiDBLite consensus disorder prediction 425 446 - -
Seca9g00038 446 Pfam Protein of unknown function (DUF4005) 321 402 IPR025064 -
Seca9g00038 446 Gene3D - 122 176 - -
Seca9g00038 446 MobiDBLite consensus disorder prediction 18 38 - -
Seca9g00038 446 MobiDBLite consensus disorder prediction 430 446 - -
Seca9g00038 446 MobiDBLite consensus disorder prediction 24 38 - -
Seca9g00038 446 SMART iq_5 123 145 IPR000048 GO:0005515
Seca9g00038 446 SMART iq_5 146 167 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00038 Seca-Chr9 1304197 1306102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00038 1 403 IQD Protein Family AT3G16490 52.068 2.21e-102 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00038 - - aprc:113866809 690.263