Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00032 ATGACAATAATAGCCCCATCCCGTCTTAAATTATCATTTTATTGTCTTCTTACCTTTTTACTCATCCTGAGCCATGCAGACTCTCAATCTCAGCTGCATGATCAAGAACATGCAGTCCTACTGAAGATAAAGCTGCACCTACAAAACCCACCTTTCCTCAGTCACTGGAATTCATCAAACACCTTCCACTGCTCCTGGCCAGAGATCAACTGCACCAGTGGCTCTGTCACTGGATTGACTTTGGTCAACGCCAGCATCACTCAAACAATTCCACCTTTCCTATGTGACCTCACAAACCTCACATATGTTGATTTCAGCCAAAATTTCATTCCTGGGGAGTTCCCAACATATCTATATCAGTGTTCCAAGCTGGAGTACCTTGACCTGTCATTGAACAACTTTGTTGGTAACATTCCTCATGACATTGATCGCTTGGTTAACTTGCAACATCTTAACCTTGGTATGACTAACTTCAGTGGTGACATTCCTGCAAGTATTGGAAGGTTGAAGGAACTGAGATTCCTTCAACTCCAATTTTGTCTATTTAATGGTACTTTCCCTGCTGAGATTGGCAACTTGTTCAATCTTGAATTCTTGGACATTTCCTCTAACTTCTTGCTCCCTCCTTGGAAGATCCCACCAAGCGTGACCAAGTTGAAGAAATTGAAGTTCCTTCATATGTATTGTTGCAACTTGGTAGGGGAAATCCCTCAAGCCATTGGAGAAATGGAAGCATTGGAGAACTTGGATATATCAGAAAACAATTTAACTGGACAAATTCCCAGCGGTTTGTTCATGCTGAAGAATTTGAGCATCCTGTACCTTCAGAAAAACCATTTTTATGGGGAGATACCAGCTGTGGTTGAAGCATTAAATTTGACTGCCCTGGATCTTGCAGTAAACAATCTTACAGGGGAAATACCAGATGATTTTGGAAAGCTCCAAAAGTTATGGTGGTTGAGTTTGTCTATGAATAACTTGTCAGGGGAGATACCACAAAGCATAGGTCGTTTTCCATCTCTGACAGATTTTCGTGTCTTTATGAACAACTTGTCAGGTACTCTTCCTCCTGACTTTGGTCTCTACTCAAAGCTTGAAAGTTTTCATATTGCATCTAACAATTTTAGGGGAAGGCTACCAGAGAACTTGTGCTATCATGGTGAGTTGCTTAATTTAACTGTTTATGAAAATCATCTCACTGGGGAGTTGCCAGAATCACTTGGAAGATGCAGTAGCCTGCTGGATCTGAAAATTCACAGAAATAATTTTTCTGGTAAAATTCCCAGTGGTCTTTGGACTTCAAATTTGCTGAATTTCATGGTAAGCAACAATAAGTTCACCGGTGAGCTCCCTGAAAGATTGTCTTCAAGTATTTCACGCTTTGAGATAAGTTACAATCAGTTTTATGGTAGAATTCCAACTGAGGTATCTTCCTGGACAAATGTGGTAGTGTTCGATGCCAGTAAGAACTACCTTAATGGTAGTATTCCACAAGGGCTAACGGCTCTTCCCAAGCTAACAACTCTATTGCTTGATCAGAACCAGCTCAAAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGTGATTCTGGATTTGAGCCAAAACCAACTCTCTGGAAAAATCCCAGATGCAATTGGTAGGTTACCTGTCCTTAGTGCGCTTGACTTGTCAGAAAATCAATTCTCTGGCCAAATTCCTTCTATACTTCCCAGAATCACCAATCTCAATCTTTCCTCCAATAATTTGACTGGGAGGATTCCAAGTGAATTTGAAAATTCTGCATTTGCCAGCAGTTTTTTGAACAACTCTGGTCTTTGTTCTGATACCCCAGCACTGAACCTTACCTTTTGCAATTCTAACCTCAAAAGGTCAACCAAAGGCTCACCTTGGTCTCTTGCTTTGATTATAAGCCTGGTGGTAGTAGCCTTCTTGCTGGCTTTGTCGACAGCACTCTTGATTATCAAACTTCACAGAAAAAGTAAGCAAGTGTTGGACAACTCATGGAAGCTCATTTCCTTTCAAAGGCTGAGTTTCACAGAATCAAACATAGTGTCCTCAATGACAGAACATAATATCATTGGCAGTGGTGGATTTGGTACAGTACACCGTGTCCCTGTTGATGGTTTAGGCTTTGTTGCTGTGAAAAAGATCTTGAACAACAGAAAGTTAGATAAAAAGCTTGAGAGCTCATTCCATGCAGAAGTTAAAATATTGAGCAATATTCGTCATTATAATATTGTGAAGTTGTTGTGCTGTATCTCTAATGAGGATTCAATGCTCCTTGTGTATGAGTATCTGGAAAACCGTAGCCTAGATAGGTGGCTGTACAACAAGACTTCAGCCAATCATTTTGGCCTTGATTGGCCAAAGAGATTGCAAATAGCCATTGGGGTTGCCCATGGTTTGTCCTACATGCACCATGACTGCTCACCACCAATTGTTCATCGAGATATTAAAGCAAGCAACATCCTTTTGGATTCTCAATTCAATTCAAAAGTTGCAGATTTTGGTCTGGCTAGGATGTTAATGAAGCCAGGGCAATTTAACACCATGTCAGCTGTGATGGGATCATTTGGCTACATGGCTCCAGAATATGTTCAAACAACTCGAGTCAGCGAAAAGATTGATATCTATAGCTTTGGGGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGTCATGGCGCCATGTTCATGTAGGAAGCAATATAGAAGAGCTGCTAGACAATGATCTTGTGGAACCTAGTTACTTGGATGAAATGTGCTGTGTTTTCAAACTTGGGATCATGTGTACTGCAACACTTCCTGCTAGTAGGCCTTCCATGAAGGAGGTCCTACACATATTGCTCCGCTGTGGAGAAGGATTTACACTTGGAGAGAGGATTATTGGGCAATATGAAGTTGTTCCTCTTCTTAAGAATTCAAAAAGGGAGAGTAGGTTGGATGTTGTTGATAATGATAGTGACTAA 3015 0.4086 MTIIAPSRLKLSFYCLLTFLLILSHADSQSQLHDQEHAVLLKIKLHLQNPPFLSHWNSSNTFHCSWPEINCTSGSVTGLTLVNASITQTIPPFLCDLTNLTYVDFSQNFIPGEFPTYLYQCSKLEYLDLSLNNFVGNIPHDIDRLVNLQHLNLGMTNFSGDIPASIGRLKELRFLQLQFCLFNGTFPAEIGNLFNLEFLDISSNFLLPPWKIPPSVTKLKKLKFLHMYCCNLVGEIPQAIGEMEALENLDISENNLTGQIPSGLFMLKNLSILYLQKNHFYGEIPAVVEALNLTALDLAVNNLTGEIPDDFGKLQKLWWLSLSMNNLSGEIPQSIGRFPSLTDFRVFMNNLSGTLPPDFGLYSKLESFHIASNNFRGRLPENLCYHGELLNLTVYENHLTGELPESLGRCSSLLDLKIHRNNFSGKIPSGLWTSNLLNFMVSNNKFTGELPERLSSSISRFEISYNQFYGRIPTEVSSWTNVVVFDASKNYLNGSIPQGLTALPKLTTLLLDQNQLKGPLPSDIISWKSLVILDLSQNQLSGKIPDAIGRLPVLSALDLSENQFSGQIPSILPRITNLNLSSNNLTGRIPSEFENSAFASSFLNNSGLCSDTPALNLTFCNSNLKRSTKGSPWSLALIISLVVVAFLLALSTALLIIKLHRKSKQVLDNSWKLISFQRLSFTESNIVSSMTEHNIIGSGGFGTVHRVPVDGLGFVAVKKILNNRKLDKKLESSFHAEVKILSNIRHYNIVKLLCCISNEDSMLLVYEYLENRSLDRWLYNKTSANHFGLDWPKRLQIAIGVAHGLSYMHHDCSPPIVHRDIKASNILLDSQFNSKVADFGLARMLMKPGQFNTMSAVMGSFGYMAPEYVQTTRVSEKIDIYSFGVILLELTTGKEANYGDEHSSLAEWSWRHVHVGSNIEELLDNDLVEPSYLDEMCCVFKLGIMCTATLPASRPSMKEVLHILLRCGEGFTLGERIIGQYEVVPLLKNSKRESRLDVVDNDSD. 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00032 1004 ProSiteProfiles Protein kinase domain profile. 690 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00032 1004 Gene3D Ribonuclease Inhibitor 144 212 IPR032675 -
Seca9g00032 1004 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Seca9g00032 1004 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Seca9g00032 1004 Pfam Protein kinase domain 692 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00032 1004 Gene3D Phosphorylase Kinase; domain 1 666 768 - -
Seca9g00032 1004 SUPERFAMILY RNI-like 290 595 - -
Seca9g00032 1004 Gene3D Transferase(Phosphotransferase) domain 1 769 971 - -
Seca9g00032 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Seca9g00032 1004 SMART serkin_6 690 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00032 1004 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 292 964 - -
Seca9g00032 1004 Gene3D Ribonuclease Inhibitor 35 143 IPR032675 -
Seca9g00032 1004 SMART LRR_typ_2 97 121 IPR003591 -
Seca9g00032 1004 SMART LRR_typ_2 528 551 IPR003591 -
Seca9g00032 1004 SMART LRR_typ_2 243 267 IPR003591 -
Seca9g00032 1004 SMART LRR_typ_2 572 595 IPR003591 -
Seca9g00032 1004 SMART LRR_typ_2 314 338 IPR003591 -
Seca9g00032 1004 SMART LRR_typ_2 193 219 IPR003591 -
Seca9g00032 1004 SMART LRR_typ_2 145 169 IPR003591 -
Seca9g00032 1004 SMART LRR_typ_2 503 527 IPR003591 -
Seca9g00032 1004 Gene3D Ribonuclease Inhibitor 213 341 IPR032675 -
Seca9g00032 1004 SUPERFAMILY Protein kinase-like (PK-like) 682 964 IPR011009 -
Seca9g00032 1004 FunFam Receptor-like protein kinase HSL1 isoform A 33 184 - -
Seca9g00032 1004 FunFam Kinase family with leucine-rich repeat domain-containing protein 672 768 - -
Seca9g00032 1004 FunFam Receptor-like protein kinase HSL1 isoform A 297 620 - -
Seca9g00032 1004 Gene3D Ribonuclease Inhibitor 342 621 IPR032675 -
Seca9g00032 1004 FunFam Kinase family with leucine-rich repeat domain-containing protein 769 980 - -
Seca9g00032 1004 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Seca9g00032 1004 SUPERFAMILY L domain-like 47 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00032 Seca-Chr9 1022353 1025893 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00032 30 1002 Receptor kinase-like Gene Family AT5G25930 50.660 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca9g00032 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00032 - - gmx:100819744 1472.22