Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00030 ATGAAAAGTTTAACACTTTCATGTCTTAAATTGCTATTTCACCATCTTGTGACCTTTTTCCTCATCCTGAGCCATGTAAACTCTCAGCCTCAGCTGTATGATCAAGAACATGAAGTCCTATTGAAGATAAAACAGTACCTTAACCCTCCATTGCTCAATCACTGGACCCCATCAAACTCCTCTCACTGCTCTTGGCCAGAGATCACTTGCACCAGTGGCTCTGTCACTGAATTGACTCTGGTTAGCACCAAAATTGATCAGACAATACCACCTTTCATATGTGACCTCAAAAACCTCACACATGTTGATTTCAATGACAATTACATTCCTGGGGAGTTCCCAACATATCTCGACAACTGTTCCAAGTTGGAGTACCTTGACCTGTCCATGAACAACTTTGTTGGTAAGATTCCTGATGACATTGATCGCTTGGTTAACTTGCAGTATCTTAATCTCAGTTACACCAACTTTTCTGGTGACATTCCTGCCAGTATTGGAAGGCTAAAGGAACTGAGATACCTTGCACTTCAATATTGTCTATTCAATGGAACCTTCCCTGATGAGATTGGCAACTTGTCCAATCTTGAAATCTTGGATTTGTCCTCCAACAACTTGTTCCTGCCTTCAAGGGTGCCCACAAACTGGACCCAATTGAACAAATTGAAGGTCTTTTATTTGTATGACTCCAACCTGGTTGGGGAAATTCCTGAAAGAATTGGAGATATGGTGGCTTTGGAGAAATTGGATATATCAGAAAACAGTTTAACTGGACACATTCCAGAAGGTTTATTCACTCTGAAGAATCTGAGCATATTGTATCTTTATGGAAACAGTCTTTCTGGGGAGATACCAAGTGTGGTTGAAGCATTAAATTTGACTGTCATTGATTTCACAAGGAATCATCTTACAGGGAAAATACCAGATGATTTTGGAAAGCTTCAAAAGTTGACTGGCTTGGCTTTGTCTAGGAACAACTTGTCAGGGGAGATACCACAAGGCATAGACCGTTTTCCATCTCTCATAGATTTTCGTGTCTTTATGAACAACTTGTCAGGTACCCTTCCTCCTGACTTTGGCCGCTACTCAAAGCTTGGAAGTTTTCATATTGCTTCTAACAATTTTAGGGGAAAGCTACCAGAGAACTTGTGCTATCATGGTGAGTTGCGTAATTTAACTGTTTATGAAAATCATCTCACTGGGGAGTTACCAGAATCACTTGGAAATTGTAGCAGCTTGCTTGATCTTAAAATTTATAGCAATGAGTTTTCTGGTAAAATTCCTAGTGGTCTTTGGAATTCAAATTTGTTGAATTTCATGGTAAGCAATAATAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCTTCAAATGTGGTAGTGTTTGAAGCCAGTGAGAACAACCTTAATGGTAGTATTCCACAAGGGCTAACAGCTCTTCCCAAGCTACAAACTTTGTTGCTTGATCAGAACCAGCTCACAGGACCACTTCCATCAGATATAATATCATGGAAGTCCCTAGTGATTCTGGATTTGAGCCAAAACCAACTCTCTGGAAAAATCCCAGATGCAATTGGTAGGTTACCTGTCCTTAGTGAACTTGACTTGTCAGAAAATCAATTATTTGGCCAAATTCCTTCTGTATTTCCCAGAATCACCAATCTAAATCTTTCCTCCAATAATTTGACTGGGAGGATTCCAAGTGAATTTGAAAATTCTGCATTTGCCAGCAGTTTTTTGAACAATTCTGGTCTTTGTTCTGATACCCCAGCACTGAATCTTACCTTGTGCAGTTCTGTCCCTCAAAGTTCAAGCAAGGACTCATCTTGGTCTCCTGCTTTGATTATAGGCCTAGTGGCAGTGGTCCTCATAATGGCTTTGTTGGCATCACTATTGATTATCAGATTCTACAGAAAAAGAAAGCAAGGATTGGATAAATCATGGAAGCTCATTGCCTTTCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCCTCACTGACAGAACATAACATTATTGGCAATGGTGGATTTGGTATAGTATACCGTGTGCCTATTGATGATTTAGGCTATGTAGCTGTGAAGAAGATTTGGGAAAACAGGAAGTTAGACCAGAATCTTGAGAGCTCATTTCATGCTGAAGTTAAGATATTGAGCAATATTCGTCATAGGAACATTGTGAAGTTGTTGTGTTGTATCTCTAATGAGGATACCATGCTCCTTGTGTATGAGTATGTGGAAAACCGTAGCCTTGACAGGTGGCTGCACAAGAAGAGTTCAGTCCATCATGTTGTCCTTAATTGGCCAAAGAGATTGCAAATAGCCATTGGGGTTGCCCAAGGTTTGAGCTACATGCATCATGAATGCTCACCACCTATTGTTCATAGAGATGTAAAAGCAAGCAACATCCTTTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGCCTGGCTAGGATGCTAATCAAGCCAGGCGAACTTGCAACAATGTCAGCTGTGCTTGGCTCATTTGGTTACATGGCTCCAGGTGATCCTAATCACATATCAATCTACTCACAGTCTCAGGCTGTGTTGTATGATCAAGAACATACTGTCCTATTGAAGATAAAACAATATTTTCAAAACCCATCATTCCTCAGTCACTGGACCCCATCAAACTCTTCACACTGCTCTTGGCCTGAGATCACTTGCACCAATGGTTCTGTCACTGAACTGGCTTTGATCAACACCAACATCACTCAAACATTACCACCTTTCTTATGTGACCTCACAAACCTCACTTACATTGATTTTCAATGGAATTGCCTTCCTGGGGAGTTTCCAACTTCTCTCTACAACTGCTCCAAGCTTGAGCACCTTGATCTCTCTCAGAACTTCTTTGTTGGTAAGATTCCTGATGACATTAACCGCTTGGCTAAGCTGCGTTTTCTTAACCTTGGTGGCAACAACTTTTCTGGTGATGTTCCTGGGAGCATTGGGGGGTTGAAGGAGCTAAGAAGTCTTCAACTTTATCAGTGTCTTTTTAATGGTACTTTTCCTGCTGATATTGGCAATTTGTCCAACCTTGAGACCTTGTTTATGTTCTCAAACAGCATGCTCCCTCCCACAAAGTTGCCATCAAGCTTGACCAAGTTGAACAAATTGAGGGTCTTTTATATGTATGACTCCAACTTGGTTGGGGAAATCCCTGAAACCATTGGAGAAATGGTGGCATTGGAGGAACTGGATTTATCAGGAAATCAATTAAGTGGAGAAATTCCAAATGGTTTGTTCACTATGAAAAATCTGAGCACACTTTTTCTTTACAATAACAGCCTTTCTGGGGAGATACCTGGAGTGATTGAAGCATACAACTTAACAGTCCTTGATCTTTCAGAGAATAATCTCACTGGGAAAATACCAGATGATTTGGGAAAGCTCAAAAAGTTAACATACTTGAGTTTGTCTATGAATCAACTATCTGGGGAGGTACCAGAAAGCATTGGTCTTCTGCCAGCTCTGACTGATTTTATTGTTTTTCTCAACAATTTATCAGGTACTCTTCCTCCAGATTTTGGCCGGTTTTCAATGCTTGAAACTTTTCAGGTTGCATCTAATAGTTTCATAGGAAGGCTGCCAGAGAACTTGTGTTATTATGGAAGGTTAGTTGGTTTAACTGCTTATGACAATAACTTGAGTGGGGAGTTGCCAGAATCACTAGGTAGTTGTAATAGCCTGCAATATCTGAGAGTTGAGAATAATCAGTTTTCTGGCAACATTCCTAGTGGTCTATGGACATCTATGAATTTGTCAACAATTATGATAAGTGAGAACAAGTTCACTGGTGAACTTCCTGAAAGATTGTCTTGGAATGTGGTGGTGTTCAATGCCAGTAACAACCTCTTCAATGGAAGTATTCCACTGGAGCTAACATCTCTTCCCCACCTAACAACTCTTCTGCTTGATCAGAACCAGCTCAGTGGGCCACTTCCTTCAGATATAACATCATGGAAGTCCCTAATAACTCTAAACCTAAGCCACAACCAACTCTCTGGAGAAATTCCAAATGCAATTGGTCAGTTATCTTCCCTTAATATATTGGACTTGTCAGAAAACCAAATCTCTGGCCAAATTCCATCTCAACTAGCCATTATGAGACTTACAAATCTCAATCTGTCCTCCAATCATTTTACAGGGAGGATTCCAAGTGAATTTGAAAACCTTGTGTATGCCAGCAGCTTCTTGAACAATTCTGGTCTCTGTGCTAATACCCCTGTACTAAACCTTACCTTGTGCAATTCTGGCCCAAAAAGGGCAAGAAATGGCTCTTCTGTGTCTCATGCTATGATCATAAGCCTAGTGATAGCATCCTCCTTACTGGCTTTATTGTCATCATTCTTGATGATCACAATTTACAGAAATAGAAAGCAAGAACTGAAGAACTCATGGAAGCTCACTTCCTTTCAAAGGCTGAGTTTCACAAAATCAAACATTGTGTCATCAATGACAGAACATAATATCATTGGCAGTGGTGGATTTGGAGCAGTATACCGTGTTGCTATTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATATGGAGTAGCAGAAAATTAGAGGAGAAGCTTGTGAATTCATTTCTTGCAGAAGTGGAAATACTAAGCAACATTCGTCATAACAACATTGTAAAGTTGATGTGCTGTATCTCCAGTGAGGATTCTCTGCTCCTTGTCTATGAGTATCTGGAAAACCATAGCCTTGATAGGTGGCTGCACAAGAAAAGTTTAGTCCATTATAACATCATTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCTGCCCAAGGTTTGTGCTACATGCATCATGACTGCTCACCACCTGTTGTTCATAGAGATATGAAAACAAGTAACATTTTGTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTGATCAAGCCAGAAGAACTTGCTACCATGTCAGCTGTGGCTGGCACATTTGGCTATATTGCTCCAGAATATGCTCAAACAACAAGAGTCAATGAGAAGATAGATGTCTATAGCTTTGGAGTAATCCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGAGATGAATACTCATCTCTTGCAGAATGGGCTTGGCGCCACATTCAGGTAGGAAGCAACATAGAAGATCTTCTAGATGATGAAATTGTGGAACCTAGTTACTCAGATGAAATGTGCAACATCTTCAAACTTGGAGTCATGTGTACTTCAACACTGCCAGCTAGTAGACCTTCCATGAAGGAGGTTTTGAAGATATTGCTCAACTGCAGCGATCTACATGTCATTGGAGAGAAGAGTGTTGGTTTCTATGATGCTGTTCCACTTCTTAAGCATTCAAAATGGGAAAAGCAGGAGGAGTATGATGATGATAGCTTTGTAGGTGGCATCACAGTTTGA 5442 0.4032 MKSLTLSCLKLLFHHLVTFFLILSHVNSQPQLYDQEHEVLLKIKQYLNPPLLNHWTPSNSSHCSWPEITCTSGSVTELTLVSTKIDQTIPPFICDLKNLTHVDFNDNYIPGEFPTYLDNCSKLEYLDLSMNNFVGKIPDDIDRLVNLQYLNLSYTNFSGDIPASIGRLKELRYLALQYCLFNGTFPDEIGNLSNLEILDLSSNNLFLPSRVPTNWTQLNKLKVFYLYDSNLVGEIPERIGDMVALEKLDISENSLTGHIPEGLFTLKNLSILYLYGNSLSGEIPSVVEALNLTVIDFTRNHLTGKIPDDFGKLQKLTGLALSRNNLSGEIPQGIDRFPSLIDFRVFMNNLSGTLPPDFGRYSKLGSFHIASNNFRGKLPENLCYHGELRNLTVYENHLTGELPESLGNCSSLLDLKIYSNEFSGKIPSGLWNSNLLNFMVSNNKFTGELPERLSSNVVVFEASENNLNGSIPQGLTALPKLQTLLLDQNQLTGPLPSDIISWKSLVILDLSQNQLSGKIPDAIGRLPVLSELDLSENQLFGQIPSVFPRITNLNLSSNNLTGRIPSEFENSAFASSFLNNSGLCSDTPALNLTLCSSVPQSSSKDSSWSPALIIGLVAVVLIMALLASLLIIRFYRKRKQGLDKSWKLIAFQRLSFTESNIVSSLTEHNIIGNGGFGIVYRVPIDDLGYVAVKKIWENRKLDQNLESSFHAEVKILSNIRHRNIVKLLCCISNEDTMLLVYEYVENRSLDRWLHKKSSVHHVVLNWPKRLQIAIGVAQGLSYMHHECSPPIVHRDVKASNILLDSQFNAKVADFGLARMLIKPGELATMSAVLGSFGYMAPGDPNHISIYSQSQAVLYDQEHTVLLKIKQYFQNPSFLSHWTPSNSSHCSWPEITCTNGSVTELALINTNITQTLPPFLCDLTNLTYIDFQWNCLPGEFPTSLYNCSKLEHLDLSQNFFVGKIPDDINRLAKLRFLNLGGNNFSGDVPGSIGGLKELRSLQLYQCLFNGTFPADIGNLSNLETLFMFSNSMLPPTKLPSSLTKLNKLRVFYMYDSNLVGEIPETIGEMVALEELDLSGNQLSGEIPNGLFTMKNLSTLFLYNNSLSGEIPGVIEAYNLTVLDLSENNLTGKIPDDLGKLKKLTYLSLSMNQLSGEVPESIGLLPALTDFIVFLNNLSGTLPPDFGRFSMLETFQVASNSFIGRLPENLCYYGRLVGLTAYDNNLSGELPESLGSCNSLQYLRVENNQFSGNIPSGLWTSMNLSTIMISENKFTGELPERLSWNVVVFNASNNLFNGSIPLELTSLPHLTTLLLDQNQLSGPLPSDITSWKSLITLNLSHNQLSGEIPNAIGQLSSLNILDLSENQISGQIPSQLAIMRLTNLNLSSNHFTGRIPSEFENLVYASSFLNNSGLCANTPVLNLTLCNSGPKRARNGSSVSHAMIISLVIASSLLALLSSFLMITIYRNRKQELKNSWKLTSFQRLSFTKSNIVSSMTEHNIIGSGGFGAVYRVAIDGLGYVAVKKIWSSRKLEEKLVNSFLAEVEILSNIRHNNIVKLMCCISSEDSLLLVYEYLENHSLDRWLHKKSLVHYNIIDWPKRLHIAIGAAQGLCYMHHDCSPPVVHRDMKTSNILLDSQFNAKVADFGLARMLIKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVILLELTTGKEANHGDEYSSLAEWAWRHIQVGSNIEDLLDDEIVEPSYSDEMCNIFKLGVMCTSTLPASRPSMKEVLKILLNCSDLHVIGEKSVGFYDAVPLLKHSKWEKQEEYDDDSFVGGITV. 1814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00030 1813 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 188 287 - -
Seca9g00030 1813 SUPERFAMILY L domain-like 865 1200 - -
Seca9g00030 1813 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 1014 1114 - -
Seca9g00030 1813 ProSiteProfiles Protein kinase domain profile. 1494 1778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00030 1813 SUPERFAMILY RNI-like 290 572 - -
Seca9g00030 1813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Seca9g00030 1813 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1093 1768 - -
Seca9g00030 1813 SUPERFAMILY L domain-like 1116 1372 - -
Seca9g00030 1813 SMART serkin_6 665 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00030 1813 SMART serkin_6 1494 1769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00030 1813 Gene3D Ribonuclease Inhibitor 184 290 IPR032675 -
Seca9g00030 1813 Gene3D Ribonuclease Inhibitor 33 183 IPR032675 -
Seca9g00030 1813 Pfam Leucine Rich Repeat 948 967 IPR001611 GO:0005515
Seca9g00030 1813 Pfam Leucine Rich Repeat 1378 1400 IPR001611 GO:0005515
Seca9g00030 1813 Pfam Leucine Rich Repeat 1071 1089 IPR001611 GO:0005515
Seca9g00030 1813 SUPERFAMILY Protein kinase-like (PK-like) 1485 1768 IPR011009 -
Seca9g00030 1813 SUPERFAMILY Protein kinase-like (PK-like) 659 841 IPR011009 -
Seca9g00030 1813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1620 1632 IPR008271 GO:0004672|GO:0006468
Seca9g00030 1813 Pfam Leucine rich repeat 1306 1366 IPR001611 GO:0005515
Seca9g00030 1813 Pfam Leucine rich repeat 1094 1152 IPR001611 GO:0005515
Seca9g00030 1813 Pfam Leucine rich repeat 98 156 IPR001611 GO:0005515
Seca9g00030 1813 FunFam Kinase family with leucine-rich repeat domain-containing protein 647 743 - -
Seca9g00030 1813 Gene3D Ribonuclease Inhibitor 291 602 IPR032675 -
Seca9g00030 1813 ProSiteProfiles Leucine-rich repeat profile. 1331 1353 IPR001611 GO:0005515
Seca9g00030 1813 Gene3D Transferase(Phosphotransferase) domain 1 651 853 - -
Seca9g00030 1813 FunFam Receptor-like protein kinase HSL1 1474 1572 - -
Seca9g00030 1813 SMART LRR_typ_2 192 218 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 1139 1163 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 144 168 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 313 337 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 1305 1329 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 922 946 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 526 549 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 970 994 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 1068 1092 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 478 502 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 1353 1377 IPR003591 -
Seca9g00030 1813 SMART LRR_typ_2 242 266 IPR003591 -
Seca9g00030 1813 Gene3D Ribonuclease Inhibitor 1168 1424 IPR032675 -
Seca9g00030 1813 Gene3D Ribonuclease Inhibitor 1036 1167 IPR032675 -
Seca9g00030 1813 SUPERFAMILY L domain-like 46 374 - -
Seca9g00030 1813 FunFam Receptor-like protein kinase HSL1 isoform A 33 183 - -
Seca9g00030 1813 ProSitePatterns Protein kinases ATP-binding region signature. 671 694 IPR017441 GO:0005524
Seca9g00030 1813 FunFam Receptor-like protein kinase HSL1 isoform A 858 1009 - -
Seca9g00030 1813 FunFam Kinase family with leucine-rich repeat domain-containing protein 1573 1782 - -
Seca9g00030 1813 SMART LRR_sd22_2 96 128 - -
Seca9g00030 1813 SMART LRR_sd22_2 1139 1165 - -
Seca9g00030 1813 SMART LRR_sd22_2 192 220 - -
Seca9g00030 1813 SMART LRR_sd22_2 922 948 - -
Seca9g00030 1813 SMART LRR_sd22_2 266 292 - -
Seca9g00030 1813 SMART LRR_sd22_2 502 534 - -
Seca9g00030 1813 SMART LRR_sd22_2 1068 1097 - -
Seca9g00030 1813 FunFam Os07g0541700 protein 744 835 - -
Seca9g00030 1813 Gene3D Ribonuclease Inhibitor 971 1035 IPR032675 -
Seca9g00030 1813 PRINTS Leucine-rich repeat signature 1353 1366 - -
Seca9g00030 1813 PRINTS Leucine-rich repeat signature 1118 1131 - -
Seca9g00030 1813 ProSiteProfiles Leucine-rich repeat profile. 1117 1140 IPR001611 GO:0005515
Seca9g00030 1813 FunFam Highly similar to receptor-like protein kinase 1116 1281 - -
Seca9g00030 1813 Pfam Protein kinase domain 667 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00030 1813 Pfam Protein kinase domain 1496 1766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g00030 1813 ProSitePatterns Protein kinases ATP-binding region signature. 1500 1523 IPR017441 GO:0005524
Seca9g00030 1813 Gene3D Transferase(Phosphotransferase) domain 1 1573 1780 - -
Seca9g00030 1813 Pfam Leucine rich repeat N-terminal domain 860 896 IPR013210 -
Seca9g00030 1813 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Seca9g00030 1813 Gene3D Phosphorylase Kinase; domain 1 1470 1572 - -
Seca9g00030 1813 Gene3D Ribonuclease Inhibitor 860 970 IPR032675 -
Seca9g00030 1813 FunFam Leucine-rich repeat receptor-like protein kinase TDR 288 597 - -
Seca9g00030 1813 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1299 1421 - -
Seca9g00030 1813 ProSiteProfiles Protein kinase domain profile. 665 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00030 Seca-Chr9 875595 884675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00030 31 841 Receptor kinase-like Gene Family AT5G25930 49.646 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca9g00030 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00030 - - gmx:100785907 1523.06