Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00015 ATGGGTTCCCAAATTAATAAGATCAGAGCAGAGAAGAAGAGTAAAAAAGAAGAGGGAGCTTCAATAGGCATCATTTTGAGATATGCTGATTGGATTGATGTGGTGTTAATGTTAATGGGTGCTTTGGGAGCAATAGGAGATGGCTTGTCCACAAACGTGTTGCTGGTGTTTGTTAGCCGTATCATGAACAGCTTAGGTTACAGTAATAACAGACAAAGTGGTGAGGCTTCCATGTCTGAGGTTGAAAAGTGCACCTTATATTTTGTCTACTTGGGATTGGCAGCTATGGTGGTGGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGGCAAGTGTTGAGAATTCGTTACAAGTATTTGGAAGCTATCCTCAGACAAGAAGTGGGGTTTTTCGATTCACAAGAAGCTACTACTTCTGAAATCATTAACAGCATATCAAAGGACACTTCTCTTATACAAGAAGTTCTCAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATCTCTGGTTTAGCATTTTCCACGTACTTCTGTTGGAGGTTAGCTTTAGTAGCATTTCCAACACTGCTTTTGCTTATAATCCCTGGCATGATTTATGGCAAATACCTCATCTATTTGTCAAGATCATCCATGAAAGAGTATGGCAAAGCAAATGCAATAGTAGAACAGGCACTGAGCTCAATCAAAACGGTTTATTCATTCACTGCGGAGAAGAGAATATTGGGGAGATATTCAGACATATTAGATAGAACATCAAAGTTGGGAATCAAACAAGGCATAGCGAAAGGTCTAGCTGTAGGAAGCACAGGTCTATCTTTTGCAATATGGGGTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGGTGAAAGCGGAGGAAAGATCTATGCAGCTGGTGTTACCTTCATAATGAGTGGACAATCCCTTGGAGTGATACTTCCTGATTTGAAGTACTTCACAGAAGCATCTATTGCTGCTTCAAGAATATTTGATAGGATTGACCGAATACCAGAAATTGATGGTGAAGACACAAAGGGAATTGTGTTAGAGAGCATTAGTGGGAAGATAGATTTTGAACATGTGAAATTCACATACCCTTCTCGCCCAGATATGGTTGTACTTAATGATTTCAATCTCCAAGTGGAAGCAGGGAAAACTGTTGCTCTAGTTGGTGCAAGTGGAAGTGGTAAGTCCACTGCAATAGCATTATTGCAAAGATTTTATGATGCAGATGAAGGTGTTGTAAGGGTTGATGGTGTGGACATAAAAAGCCTACAGTTGAAATGGATAAGAGGGAAAATGGGCCTTGTAAGTCAAGAACATGCTATGTTTGGGACATCCATAAAGGAGAATATTATGTTTGGGAAGCCTGATGCTACCATGGATGAGATTGTTGCTGCAGCCACAGCAGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACCAAGATTGGAGAAAAAGGGGCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATCATAAAAAATCCTGTAATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATTACTAGTTCAAAATGCCCTTGATCAGGCCTCTATGGGGAGGACTACATTGGTAGGTACAATGCTTGATAAATTGTCACAATCATGCAATTCTATACATACATTAAACTACTCCATATATAGTCATAGTGTCACACACACATCAATCTTATTAAGAGCAGGATCACATAATGAACTTATCAACCGTCCAAATGGCCACTATGCAAAACTGGCAAAATTACAAACACAATTGAGTATGGATGACCAAGATCAAAATCCAGAAAATATTACTACTCTTTCTGCAGCAAGAAGTAGTGCAGGTAGACCAAGCACTGCCAGGTCAAGCCCTGCCATCTTTCCAAAGTCACCATTGCCTAATGACACCACTCCATCCCTTGTGTCTCACCCTTCACCTTCTTTTCCAAGGCTTCTTTACTTAAATGCCCCTGAATGGAAACAGGGTCTGATTGGAACCCTCTCAGCTATGGCCTTTGGCTCTGTTCAACCAATATATGCTTTAACCATTGGGGGTATGATTTCAGCATTTTTTGCTGAAAGCCATCAGGAGATGAGACACAGGATCAGAACTTATTGTTTAATTTTCTTTGCCATATCCATTGCTTCTATTATCCTCAATATCTTGCAACACTACAATTTTGCTTATATGGGAACCAAGTTAACTAAAAGGATAAGATTGTGTATGTTGGAGAAGATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAAAAAAACTCTAGTGGAGCATTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTAAAGTCCCTTGTTGCAGATAGACTTTCTTTACTAGTTCAAACTACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCAGTGGCTTGGAAGCTTGCTCTTGTTATGATAGCAGTGCAGCCACTAACAATTCTTTGCTTTTATACAAGAAAAGTTTTGCTCTCTACACTTTCAACCAAATTTGTTAAAGCACAGAATCAAAGTACCCAAATTGCAGTGGAGGCAGTTTATAATCACAGAATTGTGACTTCATTTGGAAGCATTGGTAAAGTTCTAAGACTATTTGATGAGGCTCAAGAGGCGCCAAGGAAGGAAGCAAGAAAGAAGTCTTGGCTAGCTGGCATTGGAATGGGTTCAGCTCAGTGCCTAACATTCATGACATGGGCTTTGGATTTCTGGTATGGTGGTACACTGGTGGAAAAGAGAGAAATATCAGCAGGGGATGTGTTCAAAACATTTTTTGTACTTGTAAGCACTGGCAAGGTCATAGCTGAAGCTGGAAGCATGACTTCTGACCTTGCCAAGAGCTCAACAGCAGTTGCATCAGTCTTTGAAATTCTTGATCGAAAATCTCTAATTCCCAAGGCTGGAGATAACACTAATGGGATTAAGTTGGAAAAGATGAATGGAAAGATAGAGTTGAAGAATGTTGATTTTGCTTATCCAAGTAGGGCAAAGACCCCAATTTTGCGCAAGTTTTGCTTGGAAGTGAAGCCAGGAAAAAGTGTTGGGCTGGTTGGGACAAGTGGATGTGGAAAATCAACAGTGATTGCTTTGATTCAAAGATTCTATGATGTTGAAAGAGGGTCAGTCAAAGTGGATAACGTGGACATAAGGGAATTAGACATTCACTGGTACAGACAACACACTGCACTAGTTAGCCAAGAACCTGTCATATATTCTGGTACCATACGTGACAACATTCTGTTTGGAAAGCAAGAAGCCACAGAGAATGAAGTCATTGAGGCTGCAAGAGCTGCAAATGCTCATGAGTTCGTATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTACAGTTGTCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTAGGAACCCAATGATACTACTGCTAGATGAGGCAACAAGTGCTCTGGATGTACAGTCAGAACGAGTTGTGCAAGAAGCACTTGATAGGATTATGGTAGGTAGAACTACAATTGTTGTGGCACATAGGCTTAACACCATAAAAGAGCTTGACTCAATTGCCTATGTGTCAGAGGGAAAGGTTCTGGAGCAAGGAACCTATGCTCAGCTTAAACACAAGAAAGGTGCCTTCTCCAATCTTGCTAGCCATCAAATCCAAACTTAG 3750 0.408 MGSQINKIRAEKKSKKEEGASIGIILRYADWIDVVLMLMGALGAIGDGLSTNVLLVFVSRIMNSLGYSNNRQSGEASMSEVEKCTLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAILRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGLAFSTYFCWRLALVAFPTLLLLIIPGMIYGKYLIYLSRSSMKEYGKANAIVEQALSSIKTVYSFTAEKRILGRYSDILDRTSKLGIKQGIAKGLAVGSTGLSFAIWGFLAWYGSHLVMYKGESGGKIYAAGVTFIMSGQSLGVILPDLKYFTEASIAASRIFDRIDRIPEIDGEDTKGIVLESISGKIDFEHVKFTYPSRPDMVVLNDFNLQVEAGKTVALVGASGSGKSTAIALLQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKPDATMDEIVAAATAANAHNFIRQLPEGYETKIGEKGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVGTMLDKLSQSCNSIHTLNYSIYSHSVTHTSILLRAGSHNELINRPNGHYAKLAKLQTQLSMDDQDQNPENITTLSAARSSAGRPSTARSSPAIFPKSPLPNDTTPSLVSHPSPSFPRLLYLNAPEWKQGLIGTLSAMAFGSVQPIYALTIGGMISAFFAESHQEMRHRIRTYCLIFFAISIASIILNILQHYNFAYMGTKLTKRIRLCMLEKILTFETAWFDEEKNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSIGKVLRLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNTNGIKLEKMNGKIELKNVDFAYPSRAKTPILRKFCLEVKPGKSVGLVGTSGCGKSTVIALIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGTIRDNILFGKQEATENEVIEAARAANAHEFVSSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPMILLLDEATSALDVQSERVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLKHKKGAFSNLASHQIQT. 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00015 1249 MobiDBLite consensus disorder prediction 630 662 - -
Seca9g00015 1249 FunFam Putative ABC transporter B family member 8 653 994 - -
Seca9g00015 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 611 IPR027417 -
Seca9g00015 1249 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Seca9g00015 1249 Gene3D ABC transporter type 1, transmembrane domain 25 976 IPR036640 GO:0005524|GO:0016020
Seca9g00015 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Seca9g00015 1249 Gene3D - 353 612 IPR027417 -
Seca9g00015 1249 PANTHER ABC TRANSPORTER B FAMILY 9 697 IPR039421 -
Seca9g00015 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g00015 1249 Pfam ABC transporter transmembrane region 686 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g00015 1249 Pfam ABC transporter transmembrane region 38 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g00015 1249 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Seca9g00015 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g00015 1249 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524|GO:0016887
Seca9g00015 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 336 - -
Seca9g00015 1249 FunFam Multidrug resistance protein 1A 353 612 - -
Seca9g00015 1249 Gene3D - 999 1249 IPR027417 -
Seca9g00015 1249 FunFam ABC multidrug transporter SitT 999 1247 - -
Seca9g00015 1249 FunFam ABC transporter B family member 1 24 360 - -
Seca9g00015 1249 SMART AAA_5 1036 1228 IPR003593 GO:0016887
Seca9g00015 1249 SMART AAA_5 390 601 IPR003593 GO:0016887
Seca9g00015 1249 CDD ABC_MTABC3_MDL1_MDL2 1009 1246 - -
Seca9g00015 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1245 IPR003439 GO:0005524
Seca9g00015 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Seca9g00015 1249 SUPERFAMILY ABC transporter transmembrane region 668 986 IPR036640 GO:0005524|GO:0016020
Seca9g00015 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 609 IPR003439 GO:0005524
Seca9g00015 1249 Pfam ABC transporter 1030 1176 IPR003439 GO:0005524
Seca9g00015 1249 SUPERFAMILY ABC transporter transmembrane region 25 347 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00015 Seca-Chr9 442989 452306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00015 11 1246 Calmodulin-binding Proteins AT2G36910 41.260 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00015 K05658 - gmx:100801088 2106.26