Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g00002 ATGAGTGGCTGCGGCGGTGAAGCGCGCGATGAACCCGGTGGAGGAGCGGAAGAGGAGCGAACACACGATGATGGTCTGAGGAACCACGACGACGCTGCAAGAGGGGAGAGGCATCTTGCACGGTGGCGATGGTATGGCTGGTGGCAGCACCGATCTGGTTGCGGGGAGGAGGAAGACGCACCAGTGTGCGTGACAGCCACTATTGTGGCTCGGTTGGAGAAGCTTATATTAGAGCTTTCTTCAGCTTACATCAGCTTAGTCTTGAGAATAAAGACAATATCACACAGTTTGTTGGCCTTGTCTCCAGAAGATGTGCTTCCTGCTGTGTATCTATGTACAAATAAAACTGTTGCAGACCATGAAAATATGGAACTGAATATTGGTGGAAGTTTAGTCACTGTAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGAGATCTTGGTTGGATGATTGTTTTATTAGTTTTTGACCTTTTTACTGAACCATCCTTCACGGACATGGGTCAACTGCCAACCATCCTTCACGGACAGCATATGGAAATGTGGACCTTAAAGGTTTGGACTTACAGATCTTGA 606 0.4686 MSGCGGEARDEPGGGAEEERTHDDGLRNHDDAARGERHLARWRWYGWWQHRSGCGEEEDAPVCVTATIVARLEKLILELSSAYISLVLRIKTISHSLLALSPEDVLPAVYLCTNKTVADHENMELNIGGSLVTVALEEACGTNRLKIREMYNKFGDLGWMIVLLVFDLFTEPSFTDMGQLPTILHGQHMEMWTLKVWTYRS. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g00002 201 Gene3D - 65 167 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca9g00002 201 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 55 159 - -
Seca9g00002 201 Pfam DNA ligase N terminus 92 158 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca9g00002 201 MobiDBLite consensus disorder prediction 11 30 - -
Seca9g00002 201 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 91 160 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca9g00002 201 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g00002 Seca-Chr9 36563 38719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g00002 96 158 Core DNA Replication Machinery Family AT1G49250 37.500 3.12e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g00002 - - aip:107635689 124.405