Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08273 ATGAGCCTCCTCATTGGGTTCTTCTCTGGATATCTTCTTAATGGCATATGTGAGATTATATATCTTGTGATAATAAGCGTTACGTATTATTTCATTGTGAAGTCTTCCTTTGCCTATATCCCTGGATACTATTTAAGCGGAATTCACAGGTACACAAGCTTCTTGATGGCTGCTGTTGGAATTCTGCTCTTTCTTTTGACCAGCTTTTCTGATCCGGGGACAATAAAGACTGAGAATGTTTCTCAGTATCTTTCTGCTTATCCCCATGATATTTTTATGAAATATGTCAGGAGGCATTTCGTTTTGTGCTTGTATGGAACAGTTGCCATTGGCTTGCTTCTTGCTGGAAGACTAAAAGAATTGAAAGTTGTCTATATTCTAACAGTTTATTATGGAATAGAAAATTCTTTTATGGATTTAGCTCCTCATGTTGTACAGTGGTTGTTGGAATCCTACAACACTCAGATACTAATTATGGTGTTTCTTGCAATTGTTGGGATGCTGTTAGCCGGTTTCTTTGGTTACCATGGAAAGCTTTGCCTTAGCAACACTACCACTAATGAGATGTTTGGGAAATGTTTAACTAGTGCTAATGAGCTTAGCTGTCGTTCTCATTGTTTGTTGCGAGTAACTGTTATTGGGGAGAATTTGATCAATGGCCAGAGAACAAGGAGTCACCTATGGCTAGTAGACTTAGCTGGCAGTGAGCGTGTGGGAAAAACTGAAGCTGAAGGAGAAAGGCTGAAGGAATCTCAGTTCATAAATAAGTCTCTATCAACACTTGGTGATGTTATTTCAGCTCTTGCGTCCAAATCAGCCCACTTACCTTTCAGGAACTCGAAGCTCACTCATATACTCCAGAGCTCTTTAGGTGGAGATTGCAAAACTTTAATGTTTGTCCATATACTTCCAAATAAAGCAGATCTGACAGTGTTCACTGAATTTTGCAAAACTCTAATGTTTGACCTCATTGGGTTCTTCTTTGGATATCTTCTTAATGGCATCTGTGAGATAGGCATAAGGCATATGTATGGATTTGATTTATGTTTAGTTGCATGGATTGACAGCAAAGGTGCATTATGGAACTTTTTCATTGAGGATGGTGTTAAAGAAACTTGGGCATCATTGGTATTCATTGTTTGTGCACTGGAAGTTGGATCTATCATTGCTGGTGAAACAGTTGAAGTTGATGATCAAATAAAGGTATGA 1209 0.3846 MSLLIGFFSGYLLNGICEIIYLVIISVTYYFIVKSSFAYIPGYYLSGIHRYTSFLMAAVGILLFLLTSFSDPGTIKTENVSQYLSAYPHDIFMKYVRRHFVLCLYGTVAIGLLLAGRLKELKVVYILTVYYGIENSFMDLAPHVVQWLLESYNTQILIMVFLAIVGMLLAGFFGYHGKLCLSNTTTNEMFGKCLTSANELSCRSHCLLRVTVIGENLINGQRTRSHLWLVDLAGSERVGKTEAEGERLKESQFINKSLSTLGDVISALASKSAHLPFRNSKLTHILQSSLGGDCKTLMFVHILPNKADLTVFTEFCKTLMFDLIGFFFGYLLNGICEIGIRHMYGFDLCLVAWIDSKGALWNFFIEDGVKETWASLVFIVCALEVGSIIAGETVEVDDQIKV. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08273 402 ProSiteProfiles Kinesin motor domain profile. 195 328 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca8g08273 402 SMART kinesin_4 109 319 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca8g08273 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 308 IPR027417 -
Seca8g08273 402 Gene3D Kinesin motor domain 179 322 IPR036961 -
Seca8g08273 402 ProSitePatterns Kinesin motor domain signature. 225 236 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca8g08273 402 Pfam Kinesin motor domain 195 309 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca8g08273 402 PRINTS Kinesin heavy chain signature 195 212 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca8g08273 402 PRINTS Kinesin heavy chain signature 226 244 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca8g08273 402 PRINTS Kinesin heavy chain signature 275 296 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca8g08273 402 PANTHER KINESIN-LIKE PROTEIN KLP-3 194 321 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08273 Seca-Chr8 180533368 180539824 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08273 195 309 Calmodulin-binding Proteins AT5G65930 52.174 8.93e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08273 K10406 - gmx:100808603 211.075