Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08267 ATGGCTTTAGAGCAGCAATTATCGCTAGGCTTAGTTGACGGCGAAGCTGACGGAAACACTAACGGCGTGGATGGTCGGCCGGCGTCGACGGATGGCGGAGATGATGGAGGCAAAGCGCCGAGACTGCCACGGTGGACAAGACAGGAGATTCTGGTTCTGATACAGGGAAAGAGAGACGCAGAAAATAAGTTCAGGAGGGGTCGCACCGCAGGATTGCCATTCGGGTCGGGTCAGGTGGAGCCGAAATGGGCATCCGTGTCATCGTACTGCAGAAAGCATGGAGTGAACAGAGGTCCTGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAATCTCAGATAAGGGAGGAGACGGAGTCGTTTTGGGTCATGAGAAACGATTTAAGGAGAGAGAGGAAATTGCCTGGATTTTTCGACAAGGAGGTCTATGATATTCTAGATTCAGGGTCGCAGGCGGCGCCGGCGTTAGCTCTAGCTCTGTCATCGCCTGCGGCAACTGTAACAGAGCCATTGGACCAGGGTAAAGGTAAGGACAAGGACAGCAAAAGAGTGGCGGACGAAGCTGAGCCACACATGTATGACAGTAACAGGAGCGCCGCCGGTGAGGATGGTTTATTCTCAGATTTTGAACAAGAAGAAGTGGGTGCCAGTCCCGAGAAGAAGGATGTTTTGGCTTCCTCCAAAGACATTCCTGCTCCTATTCCTATCTCAGGTTCAGTTTTGATTGTTCCACTGCAATATGGGAGGCTTCCTTTCTTATTTCCTCATTTTGTTCTTTCTGCCTTTTCTGCACTACTGGCATGA 831 0.509 MALEQQLSLGLVDGEADGNTNGVDGRPASTDGGDDGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPFGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVMRNDLRRERKLPGFFDKEVYDILDSGSQAAPALALALSSPAATVTEPLDQGKGKDKDSKRVADEAEPHMYDSNRSAAGEDGLFSDFEQEEVGASPEKKDVLASSKDIPAPIPISGSVLIVPLQYGRLPFLFPHFVLSAFSALLA. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08267 276 Gene3D - 45 115 - -
Seca8g08267 276 ProSiteProfiles Myb-like domain profile. 44 110 IPR001005 -
Seca8g08267 276 CDD GT1 43 117 - -
Seca8g08267 276 Pfam Myb/SANT-like DNA-binding domain 44 133 IPR044822 -
Seca8g08267 276 MobiDBLite consensus disorder prediction 177 213 - -
Seca8g08267 276 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 17 246 - -
Seca8g08267 276 MobiDBLite consensus disorder prediction 181 202 - -
Seca8g08267 276 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08267 Seca-Chr8 180392765 180395932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08267 34 118 Trihelix Transcription Factor Family AT1G76890 27.059 3.56e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g08267 Myb_DNA-bind_4 5.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08267 - - pcin:129308058 361.303