Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08258 ATGGCGTCTGCATTTACAATTACAACACTAACACTGGGTCAGTCAAATGTTCCGGGAAGCAGAGGCAGAATCAAAGCTTTGAACCCTAACCCTAACCCTAACCCTGCTATTATCGGGGTTAGGGGGTTTGGTGGTGCTGTGAATGTGAGTATGAATATGAATTGTTGTTCTCCACACACAAAAAAGGGTTCGGTAGTCTTTCGGGTGAGGGCCAGTGGCAGTTCAGAGGAAGTAGCAGGTCCACAGTCAAAAGTGACTCACAAAGTATACTTTGACATCAGTATAGGAAATCCAGTTGGGAAGCTTGCCGGAAGGATTGTCATTGGACTCTACGGTGACGATGTGCCCCAAACAGCAGAGAACTTCCGTGCCCTTTGTACAGGAGAGAAGGGTTCTGGCTACAAGGGTTCCTCCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGGGACTTTGACAAAGGAAATGGAACTGGAGGAAAAAGTATATATGGTCGTACTTTCAAGGATGAGAATTTTAAATTGTCTCATACTGGACCAGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGCCAGTTTTTCATATGCACTGTGAAGACACCATGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATCGAGTCACAGGATACAGATCGGGGTGACCGTCCTAGAAAGAAGGTAACCATCAGTGACTCTGGTGAGCTTCCAATTGCTTGA 765 0.4601 MASAFTITTLTLGQSNVPGSRGRIKALNPNPNPNPAIIGVRGFGGAVNVSMNMNCCSPHTKKGSVVFRVRASGSSEEVAGPQSKVTHKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGSGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQDTDRGDRPRKKVTISDSGELPIA. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08258 254 MobiDBLite consensus disorder prediction 230 245 - -
Seca8g08258 254 SUPERFAMILY Cyclophilin-like 81 251 IPR029000 -
Seca8g08258 254 CDD cyclophilin_ABH_like 87 249 - -
Seca8g08258 254 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 134 151 IPR020892 GO:0003755|GO:0006457
Seca8g08258 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Seca8g08258 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 197 IPR002130 GO:0000413|GO:0003755
Seca8g08258 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 197 209 IPR002130 GO:0000413|GO:0003755
Seca8g08258 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Seca8g08258 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 225 IPR002130 GO:0000413|GO:0003755
Seca8g08258 254 Gene3D - 76 253 IPR029000 -
Seca8g08258 254 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 250 IPR002130 GO:0000413|GO:0003755
Seca8g08258 254 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 88 251 - -
Seca8g08258 254 MobiDBLite consensus disorder prediction 230 254 - -
Seca8g08258 254 FunFam Peptidyl-prolyl cis-trans isomerase 74 254 - -
Seca8g08258 254 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 247 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08258 Seca-Chr8 180318283 180321001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08258 104 248 U-box Gene Family AT5G67530 47.945 2.19e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08258 K03768 - gmx:100777088 371.703