Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08253 ATGGGATCATGTCTCTCGGCGGCGGGGGCTTCACCTCCGCTTCCTCTTCCTTCTCCATCTTCCTCTTCTCAATCACCCTCACTTTCCTCTGATTCCGGTATGGAAATTCGGTTGCACAGAGTCCCTGGCAGACTCTTCTTGAATGGTTCCTCCCAGATTGCATCCTTGTTCTGTAAGCAAGGCAGAAAAGGGATCAATCAGGATGCTATGCTTCTTTGGGAGAACTTTTGTTCAAAGGAGGGCACCGTTTTTTGCGGTGTTTTTGATGGGCATGGACCTTGTGGTCACGTGGTTGCCAAGAAAGTCAGGGATTCTTTCCCTTTAAAGCTCATTGCTCAATTGGATTTGCAACCTAACAACGCAAATTGTGACAAACCCACCAATATTAATTTTGTGACACTCAGGGAATCCATTTTGAAGGCTTGTAAGGCTATGGACAAAGAACTGAAACTGCACCTTCAAATTGATTGCTATTGCAGTGGGACTACAGCAGTCACCTTGATCAAACAGGGGCACGACCTTGTTATTGCCAATGTAGGGGACTCAAGAGCTGTATTGGGTACCCGAGATCAACATGATTCTCTCATTGCTCTTCAGTTGACCACTGATCTTAAGCCAAATCTTCCAAGGGAAGCAGAGAGGATAAGGCTTTGTAAAGGAAGGGTGTTTTCCCTTCGGAATGAACCACATGTTGCTCGAGTTTGGCTGCCTAACGTTGATTCACCAGGCCTGGCTATGGCACGGGCCTTTGGAGATTTTTGCCTCAAGGACTTTGGAGTGATATCTGTTCCTGAGGTCTCACATCACCGCCTCACTGACAAGGATGAATTTGTTGTATTAGCCACAGATGGGGTTTGGGATGTTTTATCAAACACAGAAGTTGTGGGCATTGTGGCATCTGCTCCACGGTCTTGTGCAGCTAGAATACTGGTTGAATCAGCTGCTCAAGCATGGAAGACCAAGCTTCCCACTTCAAAGGCAGATGATTGCTCTGTAGTTTGCCTCTTCTTTGATTCAAATTCAGACCTTAAATCACCAAACCATAATAAGGATGACATCAATTGA 1065 0.4592 MGSCLSAAGASPPLPLPSPSSSSQSPSLSSDSGMEIRLHRVPGRLFLNGSSQIASLFCKQGRKGINQDAMLLWENFCSKEGTVFCGVFDGHGPCGHVVAKKVRDSFPLKLIAQLDLQPNNANCDKPTNINFVTLRESILKACKAMDKELKLHLQIDCYCSGTTAVTLIKQGHDLVIANVGDSRAVLGTRDQHDSLIALQLTTDLKPNLPREAERIRLCKGRVFSLRNEPHVARVWLPNVDSPGLAMARAFGDFCLKDFGVISVPEVSHHRLTDKDEFVVLATDGVWDVLSNTEVVGIVASAPRSCAARILVESAAQAWKTKLPTSKADDCSVVCLFFDSNSDLKSPNHNKDDIN. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08253 354 Gene3D - 49 345 IPR036457 -
Seca8g08253 354 ProSiteProfiles PPM-type phosphatase domain profile. 53 337 IPR001932 -
Seca8g08253 354 MobiDBLite consensus disorder prediction 1 32 - -
Seca8g08253 354 Pfam Protein phosphatase 2C 60 300 IPR001932 -
Seca8g08253 354 SUPERFAMILY PP2C-like 51 339 IPR036457 -
Seca8g08253 354 CDD PP2Cc 52 337 IPR001932 -
Seca8g08253 354 PANTHER PROTEIN PHOSPHATASE 34 335 IPR015655 GO:0004722|GO:0006470
Seca8g08253 354 SMART PP2C_4 44 335 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08253 Seca-Chr8 180264957 180267275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g08253 32 341 PP2C-type Phosphatase Gene Family AT1G16220 57.227 1.69e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08253 - - gmx:100816114 470.7